BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2126.p (230 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981360|ref|YP_001351713.1| two-components system response ... 330 4e-92 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 277 3e-76 gi|152981318|ref|YP_001352484.1| response regulator of copper se... 266 9e-73 gi|152983086|ref|YP_001353412.1| response regulator of copper se... 246 8e-67 gi|152981344|ref|YP_001351979.1| two-components system response ... 193 9e-51 >gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 330 bits (846), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 162/227 (71%), Positives = 188/227 (82%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 MKIL++EDE K YL +GLTEQGC VDVA NG+DGQHLA+ DYD IVLD+MLPG DG Sbjct: 1 MKILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLPGRDGI 60 Query: 61 AVLRSLRTVKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV 120 VL++LR K TPVIMLTAR V+DRI GL GADDYL+KPFSFLELLARLQAL RRGR Sbjct: 61 EVLQALRRQKSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGRP 120 Query: 121 QEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180 QE+ +RI DL IDLI+R+A RG R+DLTAKEFALLA +AR +G++LSKT I E+VWD+ Sbjct: 121 QESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVWDV 180 Query: 181 NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRATADA 227 NF+SNTNVVEVAIKRLRAK+D P E KLLHT+RGMGY+LE R+ ADA Sbjct: 181 NFESNTNVVEVAIKRLRAKLDEPSEVKLLHTIRGMGYLLEERSEADA 227 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 277 bits (709), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 134/220 (60%), Positives = 176/220 (80%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 MKIL+VEDE K EYL KGL E G VD A +G +G LA+Q Y++++LDVMLP +DG+ Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 61 AVLRSLRTVKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV 120 +LR LR V+ TPV+ LTARD VEDR+KGL GADDYL+KPFSF+EL+AR++ L RRG V Sbjct: 61 QLLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGPV 120 Query: 121 QEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180 +E+ + I D+QID++ R+ R G R+DLTAKEF+LL ++A+R+GE+LS++ IA VWDM Sbjct: 121 RESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWDM 180 Query: 181 NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLE 220 NFDS+TNVV+VAI+RLRAK+D P +KL+ TVRG+GYVLE Sbjct: 181 NFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVLE 220 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 266 bits (680), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 132/222 (59%), Positives = 172/222 (77%), Gaps = 2/222 (0%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 MKIL+VEDE K ++Y+ +GL E G VDVA NG+DG H+A+ YD+++LDVMLP +DG+ Sbjct: 1 MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60 Query: 61 AVLRSLRTV-KQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 +++SLR Q PV+ LTAR SV+DR+KGL GAD YLIKPF+F ELLA ++ L RR Sbjct: 61 HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120 Query: 120 VQ-EAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVW 178 V ++ QL+I DL +DL RKA R G RI LT KEFALL ++ARR+GE+L ++ IA +W Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180 Query: 179 DMNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLE 220 DMNFDSNTNV++VAI+RLRAK+D P+E KL+HTVRGMGY L+ Sbjct: 181 DMNFDSNTNVIDVAIRRLRAKMDEPYEPKLIHTVRGMGYTLD 222 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 246 bits (628), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 124/227 (54%), Positives = 165/227 (72%), Gaps = 2/227 (0%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 MK+LIVEDE K EYL +GL E G AVD A NG+DG HLA+ YD+I+LDVMLP IDG+ Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGW 60 Query: 61 AVLRSLRTVKQT-PVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 +L +LR+ + P + LTARD V DR+KGL GADDY++KPF+F ELLAR++ L RRG Sbjct: 61 KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGN 120 Query: 120 VQE-APQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVW 178 +L++ DL +DL R A R G R+ LT KEF LL + R +GE+L ++ IA +W Sbjct: 121 PSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 179 DMNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRATA 225 D+NF+S+TNV++VAI+RLRAK+D ++ KL+ T+RG+GYVLE A A Sbjct: 181 DINFNSDTNVIDVAIRRLRAKMDDDYDPKLISTIRGVGYVLEDPADA 227 >gi|152981344|ref|YP_001351979.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 193 bits (490), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 152/232 (65%), Gaps = 3/232 (1%) Query: 2 KILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLP-GIDGF 60 + LI+ED+ + Y+ KGL E G V +G++G LA+ ++DVI+LD MLP G+DG Sbjct: 3 RCLIIEDDTHNALYIAKGLKEIGYEATVCADGIEGMELAVGGEWDVIILDRMLPQGMDGL 62 Query: 61 AVLRSLRTV-KQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 ++L +LR + K+TPV++L+A ++++R++GL G +DYL KPF+F EL AR++AL R + Sbjct: 63 SILAALREMGKRTPVLILSALSAIDERVRGLQAGCNDYLTKPFAFPELAARVEALLRWTQ 122 Query: 120 VQEA-PQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVW 178 E +L + DL+++L++R RGG + L +EF LL M +G++L++T + E VW Sbjct: 123 PNEVIRELCVEDLKVNLLTRSVERGGRPLSLQPREFRLLVYMMTHKGQVLTRTMLLESVW 182 Query: 179 DMNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRATADASDD 230 + FD TNV++ I RLR K+D F L+HT R +GY+L P + +DD Sbjct: 183 NYQFDPQTNVIDAHISRLRNKVDKGFAVPLIHTRRNLGYILTPNPQTEPADD 234 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 495,268 Number of extensions: 19003 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 32 Length of query: 230 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 150 Effective length of database: 925,261 Effective search space: 138789150 Effective search space used: 138789150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)