BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2125.p (479 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982803|ref|YP_001351714.1| two-component system sensor pro... 355 3e-99 gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 220 2e-58 gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing... 208 5e-55 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 201 8e-53 gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 96 3e-21 >gi|152982803|ref|YP_001351714.1| two-component system sensor protein [Janthinobacterium sp. Marseille] Length = 463 Score = 355 bits (912), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 202/460 (43%), Positives = 282/460 (61%), Gaps = 15/460 (3%) Query: 22 QSITARLVLMSAASALLIFAVAGVALYTVLKGELLRHERDGLITTLNDISYQIERAGNT- 80 SI RL LM A +A ++F++ G ALY EL RH+ + T + I R NT Sbjct: 10 HSIARRLTLMFALAAAVVFSITGYALYQFQCIELRRHQLQEIKTRFEFVESLIVRRINTA 69 Query: 81 ERWSRVQMKLAALSQGDQHVFFWIASDNAQFTFGDLTRLNPAAIS---HDDGKSVGRLHL 137 E+W ++ K+ L+ D + + + S + F G P A ++G V R+ Sbjct: 70 EKWLLLEDKMTELTPQDGSIVYLVESKDPAFRLG-----RPFAADARISNEGNGVRRIVT 124 Query: 138 PGRRYPLHIMTRTLPALDERPEVRVTVGVDGAPYFEMRRTFLLATTISSLLGIVLAVISS 197 Y ++ LPA ERP V +TVG+D + + R A I+ L G+V+ Sbjct: 125 ENGTYL--TLSGELPAAGERPAVTLTVGLDASAFDTTSRAINAALVIAFLFGVVVVAGLG 182 Query: 198 YWIARAGLAPLRRMSARAQSFSPRKLSARMPVEALPEELSVLADAFNGALERIEQAYTQL 257 +WIAR GL + +S A++ SP L+ R+P +P EL+ L +FNGAL R+EQAY QL Sbjct: 183 WWIARRGLLAVDDLSRHAENLSPLNLAERLPTGDMPSELNGLVLSFNGALGRVEQAYVQL 242 Query: 258 EAFNADVAHELRTPLANLIGQTQVALARERSAGEFKDVLQSNLEELDRIRSIVNDMLFLA 317 FNADVAHELRTPL NLIGQTQV L+RERSA E +VLQSNLEEL+R+R+I+NDMLFLA Sbjct: 243 STFNADVAHELRTPLGNLIGQTQVMLSRERSAEELTEVLQSNLEELERLRTIINDMLFLA 302 Query: 318 RSDQGEAATARVPARVADEVHKTADFFEFVLDDAGMGITVTGDTTTTATMETALFKRALT 377 ++D+G A +A EV K+A+F + +++DAG+ + V GD A+++ +LF RA+T Sbjct: 303 QADRGIRAANLELTSIASEVLKSAEFLDMLIEDAGVSLVVEGD--AEASIDKSLFGRAIT 360 Query: 378 NLIQNAIQHSPQGAQLRIDIASGQDMVSVAVTNPGPAIDEQHLPRLFDRFYRVDSARQDI 437 NL+ NAIQH + + +R+ I V++ V+N G ++ HL RLF+RFYRVDS+R D Sbjct: 361 NLLYNAIQHCDRNSTIRVHIEERDHAVAINVSNQGVPVEPHHLERLFERFYRVDSSRTDS 420 Query: 438 NGSHGHGLGLAIVKAVARMHGGRAFASSSDGHNTIGFTIA 477 + S HGLGLAIVKA+A MHGG FA+S+ TIGFT+A Sbjct: 421 DNS--HGLGLAIVKAIAHMHGGTVFAASNAEMTTIGFTVA 458 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 220 bits (560), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 149/474 (31%), Positives = 247/474 (52%), Gaps = 45/474 (9%) Query: 17 RLPLRQSITARLVLMSAASALLIFAVAGVALYTVLKGEL--------------LRH---E 59 +L R S+T+R+ L+ ++LIF+ G LY L G+L +RH E Sbjct: 2 KLIQRMSLTSRIGLLFFLVSVLIFSGVGTYLYRSLAGQLEFRDDQELMGKISLMRHLAEE 61 Query: 60 RDGLITTLNDISYQIERAGNTERWSRVQMKLAALSQGDQHVFFWIASDNAQF-TFGDL-T 117 D + D Y ++ A + +R + L D ++ SD T L Sbjct: 62 SDSIAAIRKDPHYFLDAAASHDRL------IIMLKDVDGNIILHTNSDQGSLPTIAVLPL 115 Query: 118 RLNPAAISHDDGKSVGRLH----LPGRRYPLHIMTRTLPALDERPEVRVTVGVDGAPYFE 173 +NP +S+ L L R R+ ++ + V + E Sbjct: 116 EMNPVP------RSITLLWTSTGLTARAIAAQGKVRS------GEKIVIVVARTASDRME 163 Query: 174 MRRTFLLATTISSLLGIVLAVISSYWIARAGLAPLRRMSARAQSFSPRKLSARMPVEALP 233 + + + + +++L G +LA + Y + R GL P+R ++ +A S + +L R+ + + P Sbjct: 164 LLKAYRVEIGMAALCGTLLAALLGYILVRRGLRPVRLIAGQASSITAHRLDTRLDLSSAP 223 Query: 234 EELSVLADAFNGALERIEQAYTQLEAFNADVAHELRTPLANLIGQTQVALARERSAGEFK 293 +EL L AFN L+R++ ++ +L F+AD+AH+LRTPL NL+ QTQVAL + RS +++ Sbjct: 224 QELHELVQAFNAMLDRLDGSFQRLSQFSADLAHDLRTPLNNLMVQTQVALVQARSVEDYQ 283 Query: 294 DVLQSNLEELDRIRSIVNDMLFLARSDQGEAATARVPARVADEVHKTADFFEFVLDDAGM 353 +L SN+EE +R+ +V MLFLAR + + + +E+ + AD+FE + D+AG+ Sbjct: 284 GLLISNVEEYERLTRMVESMLFLARVEHTHVMLNKSALSLPEELQRIADYFEGLADEAGV 343 Query: 354 GITVTGDTTTTATMETALFKRALTNLIQNAIQHSPQGAQLRIDIASGQDMVSVAVTNPGP 413 +TV A + L +RA+ NL+ NAI ++P+GA + + D +V+V NPG Sbjct: 344 RLTVEAGGRVYA--DAILLRRAIGNLVANAIPYTPRGATIVLKGVMTADGATVSVVNPGA 401 Query: 414 AIDEQHLPRLFDRFYRVDSARQDINGSHGHGLGLAIVKAVARMHGGRAFASSSD 467 I QH+P +F+RFYR D+AR N + GLGLAIV+++ +HGGRA +S + Sbjct: 402 GIAAQHIPHVFNRFYRGDAARS--NSATSTGLGLAIVQSIMALHGGRATVTSEE 453 >gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 458 Score = 208 bits (530), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 113/317 (35%), Positives = 181/317 (57%), Gaps = 5/317 (1%) Query: 160 VRVTVGVDGAPYFEMRRTFLLATTISSLLGIVLAVISSYWIARAGLAPLRRMSARAQSFS 219 V V + VD A + F + L+ + ++ +W AR GL+PLR M+ARAQ+ + Sbjct: 139 VIVVIAVDKAIHTHFMSMFRTTLMLYILVAAMATIMLGWWAARQGLSPLRTMAARAQAVT 198 Query: 220 PRKLSARMPVEALPEELSVLADAFNGALERIEQAYTQLEAFNADVAHELRTPLANLIGQT 279 + + RMPV+A+P E++ LA N L+R++ +L F+AD+AHELRTP++N++ QT Sbjct: 199 SQNMKERMPVDAVPTEMTDLAVKLNAMLDRLQNDIARLTEFSADLAHELRTPISNMLTQT 258 Query: 280 QVALARERSAGEFKDVLQSNLEELDRIRSIVNDMLFLARSDQGEAATARVPARVADEVHK 339 V L + RSA +++D L SN EEL R+ ++DMLFLA+++ G A + +A E Sbjct: 259 HVVLNQSRSAADYRDSLSSNAEELQRLGKTISDMLFLAQTENGLALPSVEKLNMAQECQA 318 Query: 340 TADFFEFVLDDAGMGITVTGDTTTTATMETALFKRALTNLIQNAIQHSPQGAQLRIDIAS 399 +F+E + ++ + + GD + +F+RAL NL+ NA++++P + I I + Sbjct: 319 LLEFYEALAEEKEVTLRCEGDAVVIG--DRLMFRRALNNLLSNALRYTPSHGTISIKIKA 376 Query: 400 GQDMVSVAVTNPGPAIDEQHLPRLFDRFYRVDSARQDINGSHGHGLGLAIVKAVARMHGG 459 Q V V N G I + P LFDRFYR D +R+ + S GLGL+I +A+ + HGG Sbjct: 377 AQAGTVVTVENDGKEIPIEIQPHLFDRFYRADKSRKK-SESDSAGLGLSITRAIMQAHGG 435 Query: 460 RAFASSSDGHNTIGFTI 476 S G + F++ Sbjct: 436 S--VSVVSGESKTAFSL 450 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 201 bits (511), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 195/335 (58%), Gaps = 20/335 (5%) Query: 153 ALDERPE---------VRVTVGVD-GAPYFEMRRTFLL-ATTISSLLGIVLAVISSYWIA 201 AL+ RPE V + + +D + M +T L AT I S++ +++A + W Sbjct: 147 ALEVRPENTPGGIPFIVAIAMDIDFHLDFLTMFKTILWWATLIVSVIALIVAWCAVQW-- 204 Query: 202 RAGLAPLRRMSARAQSFSPRKLSARMPVEALPEELSVLADAFNGALERIEQAYTQLEAFN 261 G P+R++S ++ +L R+ +P EL+ LA +FN L RIE + +L F+ Sbjct: 205 --GHRPIRKVSRDIRAIRSSRLDVRLDPTEVPIELAELAASFNDMLGRIEDGFAKLANFS 262 Query: 262 ADVAHELRTPLANLIGQTQVALARERSAGEFKDVLQSNLEELDRIRSIVNDMLFLARSDQ 321 AD+AHELRTP+ NL+ QT+VAL++ RS+ E++++L SNLEE +R+ +++DMLFLA+++ Sbjct: 263 ADIAHELRTPVTNLVMQTEVALSQSRSSAEYREILYSNLEEFERMSRMISDMLFLAQTEN 322 Query: 322 GEAATARVPARVADEVHKTADFFEFVLDDAGMGITVTGDTTTTATMETALFKRALTNLIQ 381 +A + D+FE + ++A + +T+ G+ + + RAL+NLI Sbjct: 323 DPHNLHLSDISIAAMIQDLFDYFEALAEEANITLTLEGNAAPVKA-DREMMLRALSNLIS 381 Query: 382 NAIQHSPQGAQLRIDIASGQDMVSVAVTNPGPAIDEQHLPRLFDRFYRVDSARQDINGSH 441 NAIQ+S G+ + + ++ + + +V+V NP I + LP+LFDRF+R D +R+ + Sbjct: 382 NAIQYSAPGSTVIVHLSQDKQVTTVSVENPAGQIAREDLPKLFDRFFRTDPSRK--RKAS 439 Query: 442 GHGLGLAIVKAVARMHGGRAFASSSDGHNTIGFTI 476 G GLGLAIVK++A HGG A+S I F I Sbjct: 440 GAGLGLAIVKSIAEAHGGTVQATSEQAQ--IKFEI 472 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 96.3 bits (238), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 134/292 (45%), Gaps = 43/292 (14%) Query: 187 LLGIVLAVISSYWIARA-GLAPLRRMSARAQSFSPRKLSARMPVEA--LPEELSVLADAF 243 +L I L ++ W A GL PL + R + P LS P+++ +PEE+ L + Sbjct: 240 ILPIALVLV---WFALTRGLRPLVELQQRIRERRPDDLS---PIDSGYVPEEILPLVGSL 293 Query: 244 NGALERIEQAYTQLEAFNADVAHELRTPLANLIGQTQVALARERSAGEFKDVLQSNLEEL 303 N LER+ Q+ + F AD AH+++TPLA + Q+++AL R+ E L+ + Sbjct: 294 NEMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELAL-RQTDQVEIHKSLEQLAKSS 352 Query: 304 DRIRSIVNDMLFLARSDQ-------------GEAATARVPARVADEVHKTADF-FEFVLD 349 ++N +L LAR++ E A V V +K D FE Sbjct: 353 KSATRMINQLLALARAENQTPTTRPLQPLELSELARDTVQEWVQTSFNKKIDLGFE---- 408 Query: 350 DAGMGITVTGDTTTTATMETALFKRALTNLIQNAIQHSPQGAQLRIDIASGQD--MVSVA 407 I V GD + + L NLI NA+ ++P G + + + ++ + + Sbjct: 409 QPDYHIMVNGDAI--------MLRELLNNLIDNALNYTPAGGHATVRVRADEEARLAYLE 460 Query: 408 VTNPGPAIDEQHLPRLFDRFYRVDSARQDINGSHGHGLGLAIVKAVARMHGG 459 V + GP I R+F+RFYR+ + G GLGLAIV+ +A+ HG Sbjct: 461 VEDTGPGIAPHEHKRIFERFYRILGS-----NVEGSGLGLAIVREIAQQHGA 507 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,049,326 Number of extensions: 42608 Number of successful extensions: 258 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 222 Number of HSP's successfully gapped: 24 Length of query: 479 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 392 Effective length of database: 899,382 Effective search space: 352557744 Effective search space used: 352557744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)