BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2124.p
         (316 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980390|ref|YP_001352411.1| 2-hydroxyacid dehydrogenase [Ja...    77   2e-15
gi|152982822|ref|YP_001355375.1| D-isomer specific 2-hydroxyacid...    72   3e-14
gi|152982997|ref|YP_001354733.1| glycerate dehydrogenase [Janthi...    60   2e-10

>gi|152980390|ref|YP_001352411.1| 2-hydroxyacid dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 327

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 131/272 (48%), Gaps = 22/272 (8%)

Query: 31  EEELVAFADLDQQQRSQCRLAIVANPDPAQ--LKLLPQLQWVHSVWAGVERL-VADLGQT 87
           E+++ + A+L Q+ + +  + + A+   +   +   PQL+ + +V  G   + VA     
Sbjct: 30  EDKIFSPAELLQKMQGKDAVVVTASEKMSADVIAANPQLKAICNVAVGYNNIDVAAATAA 89

Query: 88  DLQITRLIDPRLAATMAEAVLAWTLYLHRDMPYYARQQ--RAHQWQP--LDYVLPEQ--- 140
            + +T   D  L  T A+   AWTL +         +   RA  W+    D  L      
Sbjct: 90  GVMVTNTPDV-LNETTAD--YAWTLLMANARRVCESEHWLRAGNWKHWRFDSFLGADIHG 146

Query: 141 RRVGLLGLGALGEAAAVALRQARFPV-LGWSRSARQVAGVQTFSGMA---GLAQMLTQSD 196
             +G+LG+G +G+A  +A R   F + + +   +R     + ++  A      ++L  +D
Sbjct: 147 ATLGILGMGRIGQA--IARRSTGFDMNVIYHNRSRATPEQEAYANNARYVSKEELLRSAD 204

Query: 197 ILVCLLPLTAHTRGLLDAARLALLPPQAQLINFARGPIIDDAALHQALDAGQLRHAVLDV 256
            L+ +LP +  T  ++ AA LAL+ P A L+N ARG I+DD AL  AL   ++  A LDV
Sbjct: 205 HLILVLPYSPQTHHIIGAAELALMKPTATLVNIARGGIVDDVALIAALRENRIASAGLDV 264

Query: 257 FATEP-LPPDAWPWSHPAVTVLPHCSAPTDTT 287
           F  EP L PD    S+  V + PH  + ++ T
Sbjct: 265 FENEPALHPDFLTLSN--VVLTPHIGSGSEKT 294


>gi|152982822|ref|YP_001355375.1| D-isomer specific 2-hydroxyacid
           dehydrogenase [Janthinobacterium sp. Marseille]
          Length = 323

 Score = 72.4 bits (176), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 104 AEAVLAWTLYL--HRDMPYYARQQRAHQWQ-----PLDYVLP---EQRRVGLLGLGALGE 153
           A A L WTL +   R +P Y    +   WQ     P    L    + R + + G G +G+
Sbjct: 104 APAELTWTLIMAAMRKLPQYVNNLKDGLWQIASMSPARNTLGTALKGRTLAIWGYGRIGQ 163

Query: 154 AAAVALRQARFPVLGWSRSARQVAGVQTFSGMAGLAQ-MLTQSDILVCLLPLTAHTRGLL 212
             A   +     V+ W R A   A V+     A   Q   +++D+L   L L   TRG++
Sbjct: 164 MIAAYGKAFGMDVMVWGRPASCEAAVRDGYRAASSQQAFFSEADVLTLHLRLNDATRGIV 223

Query: 213 DAARLALLPPQAQLINFARGPIIDDAALHQALDAGQLRHAVLDVFATEPLPPDAWPWSHP 272
            A  LA + PQA  +N +R  ++   AL  AL+ G+  +A LDVF  EPLPP +      
Sbjct: 224 TADDLARMKPQALFVNTSRAELVATDALQAALEQGRPGYAALDVFENEPLPPGSPLLRME 283

Query: 273 AVTVLPH 279
            V   PH
Sbjct: 284 NVLASPH 290


>gi|152982997|ref|YP_001354733.1| glycerate dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 336

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 26/154 (16%)

Query: 121 YARQQRAHQWQPLDYVLP-EQRRVGLLGLGALGEAAAVALRQARF-------------PV 166
           + R    H W+P  Y        +G++G+G +G+A  +A R + F             PV
Sbjct: 125 HVRSGTFHGWRPKLYGAGLAGSTIGIIGMGRVGKA--IAKRLSGFEMNAVYCDSVPLNPV 182

Query: 167 LGWSRSARQVAGVQTFSGMAGLAQMLTQSDILVCLLPLTAHTRGLLDAARLALLPPQAQL 226
              + +ARQV+            ++LT SD +V +LP+T+ T  L+DA  ++ +   + L
Sbjct: 183 DEQAWNARQVS----------FDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYL 232

Query: 227 INFARGPIIDDAALHQALDAGQLRHAVLDVFATE 260
           +N +RG ++D+ A+ +AL+ G L     DVF  E
Sbjct: 233 LNTSRGSVVDENAVVEALNQGHLAGYAADVFEME 266


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 679,076
Number of extensions: 24702
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 3
Length of query: 316
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 233
Effective length of database: 914,170
Effective search space: 213001610
Effective search space used: 213001610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)