BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2121.p
         (416 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981609|ref|YP_001355214.1| hypothetical protein mma_3524 [...   406   e-114
gi|152980545|ref|YP_001355312.1| iron-regulated membrane protein...    89   6e-19

>gi|152981609|ref|YP_001355214.1| hypothetical protein mma_3524
           [Janthinobacterium sp. Marseille]
          Length = 432

 Score =  406 bits (1044), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/421 (50%), Positives = 281/421 (66%), Gaps = 26/421 (6%)

Query: 1   MRALLVLLHRWFGLAVAVFLFIAGVTGALISWDHELDAWLNPQLFDAHSAQGPVAGQPLP 60
           +RA  VLLHRW GL +A+FL I+G+TGA+ISWDHELD WLN  LF   S +GP   QP+ 
Sbjct: 2   LRASFVLLHRWCGLTIALFLLISGLTGAVISWDHELDEWLNESLFKVDS-RGPYK-QPV- 58

Query: 61  GLELARRVEAAEPALRVTYVLTETEPGHTSNMMVEPRIDPATGKLYHLDYNQIAVDPVTA 120
             ELA+ VE A+P   VT++  + E GH +   V P+++PA G+LY L YNQ+ VDPV A
Sbjct: 59  --ELAQVVEQADPRATVTFMPLQFEEGHAALFGVSPKVNPANGRLYELGYNQVFVDPVAA 116

Query: 121 EIQGRRMWGAISLSRENLLPFLYKLHYTMHLPEVGGI-ETGIWLMGIIGIVWSLDCFIAL 179
            I G+R WGA+SLSRENL+PFLYKLHY++H+PE+ GI E G+W MGII ++W +DCF   
Sbjct: 117 RIVGQREWGAVSLSRENLMPFLYKLHYSLHIPEMWGIDEWGVWFMGIIAVIWVVDCFFGF 176

Query: 180 YLSFPN--------------------WRSWRKSFVFRWRDGGHKLQFDLHRSGGVWIWVL 219
           YL+ P                     W+ W+ S+  RW  G +KL FDLHR+  +W W L
Sbjct: 177 YLTLPVRREKKLAAVAATGADNRKTWWQRWQPSWRVRWSGGSYKLNFDLHRAFSLWTWGL 236

Query: 220 LLVLAVSSVSMNLEGQVMRPILQTFSTLTASPFDTRTPLAPEKVPQPRISREQAVVLGRE 279
           L +LA ++ S+NL  +V  P++   S +T  PFD RTP+ P K     +S    +   + 
Sbjct: 237 LFILAFTAFSLNLYREVFYPVMSLVSKVTPGPFDVRTPVDPNKPILATLSFPAVIEKAKA 296

Query: 280 QGHKLGLTEPVGGVFYSGMFGVYGVGFFQPGNDHGDVGLGNAWLYFDAMSGAYEGGKIPG 339
           + +  G  EP+G VFYS  FG+YG  FF PG+DHG  G+G A LYFD  +GAY G K+P 
Sbjct: 297 EANSRGWEEPIGSVFYSNTFGIYGASFFHPGDDHGGGGVGPAALYFDGKTGAYAGNKLPW 356

Query: 340 RGSAGDIFLQAQFPLHSGRILGLTGRVLISLMGVLVAMLSVTGVILWVRKRRARVQQRAR 399
           +G+A DIFLQ QFPLHSGRILGL GR+LIS MG+LVAMLSVTGV++W +KR+ARV+   +
Sbjct: 357 QGTAADIFLQMQFPLHSGRILGLPGRILISFMGLLVAMLSVTGVVIWWKKRKARVRSELQ 416

Query: 400 L 400
           +
Sbjct: 417 V 417


>gi|152980545|ref|YP_001355312.1| iron-regulated membrane protein
           [Janthinobacterium sp. Marseille]
          Length = 376

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 170/395 (43%), Gaps = 39/395 (9%)

Query: 1   MRALLVLLHRWFGLAVAVFLFIAGVTGALISWDHELDAWLNPQLFDAHSAQGPVAG-QPL 59
           MR + V +HRW  L+V   L + GV GA++     LD W +P+ F A +A G  +   P+
Sbjct: 17  MRRIWVKIHRWLALSVGWILAVVGVLGAILILAQPLDKWAHPEFFKADTAAGSASTVTPV 76

Query: 60  PGLELARRVEAAEPALRVTYVLTETE-PGHTSNMMVEPRIDPATGKLYHLDYNQIAVDPV 118
             LE  R+    +   +  + L      G T  ++V  R +P +G +Y        ++P+
Sbjct: 77  VTLEAIRQQLITDFGSKSNFTLRPPRVAGETFWVLV--RGEPWSGTVY--------LNPL 126

Query: 119 TAEIQGRRMWGAISLSRENLLPFLYKLHYTMHLPEVGGIETGIWLMGIIGIVWSLDCFIA 178
           T   QGRR         +  + F +KLH  + L      +TG  ++  I + + +     
Sbjct: 127 TGREQGRRG------EYDGFVNFAFKLHSALLLK-----DTGKAILAWIALAYLVLLISG 175

Query: 179 LYLSFPNWRSWRKSFVFRWRDGGHKLQFDLHRSGGVWIWVLLLVLAVSSVSMNLEGQVM- 237
           L L +P  + W  S       G  +  FD+HR GG    VL L++AVS  +    G  M 
Sbjct: 176 LVLWWP--KRWPPSLRIELGKGLLRGLFDMHRIGGA---VLGLLIAVSVAT----GAYMA 226

Query: 238 -RPILQTFSTLTASPFDTRTPLAPEKVPQPRISREQAVVLGREQGHKLGLTEPVGGVFYS 296
            RP+ Q  +TL+ S       L  E+  +P I     +V    +G  +  ++PV  V   
Sbjct: 227 WRPLGQFVTTLSGSTAIKPPVLTKEESAKPAIVTLDQLV---ARGQAVFPSDPVTYVQLP 283

Query: 297 GMFGVYGVGFFQPGNDHGDVGLGNAWLYFDAMSGAYEGGKIPGRGSAGDIFLQAQFPLHS 356
                      +  +D    GL +  +Y    +G         +   G       +PLH+
Sbjct: 284 AKANQPIRLRLRLADDPHPNGLTS--VYLQPKTGEVLAAYRWDQLDPGAKAFSFVYPLHT 341

Query: 357 GRILGLTGRVLISLMGVLVAMLSVTGVILWVRKRR 391
           G + G+    L  L G+ + ML VTG+ LW R+R+
Sbjct: 342 GELGGVALEALTFLSGLALGMLGVTGIWLWWRRRK 376


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,062,244
Number of extensions: 48291
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 416
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 330
Effective length of database: 903,079
Effective search space: 298016070
Effective search space used: 298016070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)