BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2117.p (732 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 78 2e-15 gi|152982747|ref|YP_001353102.1| two-component sensor kinase Env... 74 4e-14 gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 72 1e-13 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 70 4e-13 gi|152980591|ref|YP_001354672.1| two-component system sensor kin... 67 4e-12 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 20/241 (8%) Query: 491 NQLRLDFQEVALSNENMVKRARETLLATLGHDLRDPLQAIMMAARMIEVREHSPSSSNLS 550 +L F A E +V A++ LLA H+LR PL I MA ++ + L Sbjct: 203 GRLATSFNRSAARIEALVD-AQKALLANASHELRSPLARIRMAVELMAADAQPEMRNELK 261 Query: 551 KRISSSSSRMHRLIAQVLDISRLQSGMGLDIQRRPVDVCKMVNEIVNEARMAYPDNEIIL 610 + I + +LI ++L SRL + P+D+ +V E A D + L Sbjct: 262 RNIGE----LDQLIDEILLASRLDATADATQVFEPIDLTALVAE-----ECARIDAQ--L 310 Query: 611 EAEDCGEIDLDGDRISQVVSNLLSNTRHHGELGKPSTLIVFRREDVLTMSVSNYGAAIPS 670 E + EI D + ++V NLL N R +G G + + + + + + V + G +P Sbjct: 311 ETQSV-EIPGDARLLRRMVRNLLENARRYGN-GTAIDVSLEKTGNKVVLQVCDGGPGVPV 368 Query: 671 AVRDNLFKPYKKEAMGNRRNARGLGLGLYIVSEIVSGHGGKIEVQC---DNHIITFTVTL 727 A R+N+F P+ + + R G+GLGL +V +I HGG EV C + F VTL Sbjct: 369 AERENIFAPFYRLPGASEREG-GVGLGLSLVQQIARAHGG--EVVCTGREGGGSCFKVTL 425 Query: 728 P 728 P Sbjct: 426 P 426 >gi|152982747|ref|YP_001353102.1| two-component sensor kinase EnvZ [Janthinobacterium sp. Marseille] Length = 455 Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 20/234 (8%) Query: 485 TELETANQLRLDFQEVALSNENMVKRARETLLATLGHDLRDPLQAIMMAARMIEVREHSP 544 TE+ AN F ++ + + N V+ R +LA + HDLR PL ARM E + Sbjct: 212 TEIREANH---SFNQM-VDDLNRVESDRAVVLAGISHDLRTPL------ARMQLEVELAG 261 Query: 545 SSSNLSKRISSSSSRMHRLIAQVLDISRLQSGMGLDIQRRPVDVCKMVNEIVNEARMAYP 604 ++ + S +M +I Q LD ++ +P+D+ +++ EA + Sbjct: 262 LPADARAGMQSDLEQMDAIIGQFLDYAKPSDSSHF----QPIDMTALMHSAAQEA-LRMQ 316 Query: 605 DNEIILEAEDCGEIDLDGDRISQVVSNLLSNTRHHGEL-GKPSTLIVFRRE---DVLTMS 660 D I + +D + + I +VV+NL+ N R +G+L G I R + D + + Sbjct: 317 DVRINSKIDDKLVVLGNAIDIKRVVNNLIENARRYGKLPGNDYVEIDLRCQAEGDKVIIE 376 Query: 661 VSNYGAAIPSAVRDNLFKPYKKEAMGNRRNARGLGLGLYIVSEIVSGHGGKIEV 714 V+++GA +P A D L +P+ + R A G GLGL IV IV H GK+++ Sbjct: 377 VTDHGAGVPEAEIDRLLRPFTRMDSA-RGQANGAGLGLAIVDRIVKRHSGKLQL 429 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 22/279 (7%) Query: 449 PEKQYSIGPLGPRLTPRGSFAVWKETVRGKSLPWDTTELETANQL------RLDFQEVA- 501 P Y PL + RG A+ E R +P +L+T L R+ + EVA Sbjct: 600 PASAYFYLPLVAPMRTRGVLAIKPENRRWMLIPEQRRQLDTFAALAAIALERVHYIEVAQ 659 Query: 502 ---LSNENMVKRARETLLATLGHDLRDPLQAIM-MAARMIEVR-EHSPSSSNLSKRISSS 556 L E+ +R R +LLA + HDLR PL A++ ++ + + E + + L+ + Sbjct: 660 DALLRMES--ERLRNSLLAAISHDLRTPLTALVGLSESLTRSKPELAAAQQELAHALHEE 717 Query: 557 SSRMHRLIAQVLDISRLQSG-MGLDIQRRPVDVCKMVNEIVNEARMAYPDNEIILE-AED 614 + RM L+ +LD++R+QSG + L++Q + + ++V + + +++ A Sbjct: 718 ALRMGNLVTNLLDMARIQSGEVKLNLQWQQFE--EVVGSSLRAVQSLLGRHQVHTRLAPG 775 Query: 615 CGEIDLDGDRISQVVSNLLSNTRHHGELGKPSTLIVFRREDVLTMSVSNYGAAIPSAVRD 674 ++ D I +V+ NLL N + G T+ L ++V + G +P + Sbjct: 776 LPLVNFDAVLIERVLCNLLENASKYTPAGSQITIAAELSGQYLDVAVYDNGPGLPPGQEE 835 Query: 675 NLFKPYKKEAMGNRRNAR-GLGLGLYIVSEIVSGHGGKI 712 +F+ + + G R +A G+GLGL I I+ H G I Sbjct: 836 AIFEKFTR---GERESATPGVGLGLAICRAIIEAHHGTI 871 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 19/251 (7%) Query: 491 NQLRLDFQEVALSNENMVKRARE------TLLATLGHDLRDPLQAIMMAARMIEVREHSP 544 ++ ++ E+A S +M+ R + A + H+LR P+ ++M EV Sbjct: 231 TEVPIELAELAASFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLVMQT---EVALSQS 287 Query: 545 SSSNLSKRISSSS----SRMHRLIAQVLDISRLQSGMGLDIQRRPVDVCKMVNEIVNEAR 600 SS + I S+ RM R+I+ +L +++ ++ ++ + + M+ ++ + Sbjct: 288 RSSAEYREILYSNLEEFERMSRMISDMLFLAQTENDPH-NLHLSDISIAAMIQDLFDYFE 346 Query: 601 MAYPDNEIILEAE-DCGEIDLDGDRISQVVSNLLSNTRHHGELGKPSTLIVFRRED--VL 657 + I L E + + D + + + +SNL+SN + G ST+IV +D V Sbjct: 347 ALAEEANITLTLEGNAAPVKADREMMLRALSNLISNAIQYSAPG--STVIVHLSQDKQVT 404 Query: 658 TMSVSNYGAAIPSAVRDNLFKPYKKEAMGNRRNARGLGLGLYIVSEIVSGHGGKIEVQCD 717 T+SV N I LF + + +R A G GLGL IV I HGG ++ + Sbjct: 405 TVSVENPAGQIAREDLPKLFDRFFRTDPSRKRKASGAGLGLAIVKSIAEAHGGTVQATSE 464 Query: 718 NHIITFTVTLP 728 I F +TLP Sbjct: 465 QAQIKFEITLP 475 >gi|152980591|ref|YP_001354672.1| two-component system sensor kinase [Janthinobacterium sp. Marseille] Length = 566 Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 108/224 (48%), Gaps = 27/224 (12%) Query: 515 LLATLGHDLRDPLQAIMMAARMIEVREHSPSSSNLSKRISSSSSRMHRLIAQVLDISRLQ 574 L A++ H++R+PL AI A +++ E S L +S + +R++R+I +L +SR Sbjct: 349 LTASIAHEVRNPLSAIGHATSLLKEDELSAGQQRLLSIVSDNVARLNRMIEDILKLSRKA 408 Query: 575 SGMGLDIQRRPVDVCKMVNEIVNEARMAYPDNEIILEAEDCG--EIDLDGDRISQVVSNL 632 P+ + + +++++E + + ++ D ++ D + ++V NL Sbjct: 409 HQ-----YHEPLSLGLLFDDLLSELSEIHEIKDGMIAVADMKPYKVRFDPLHLREIVLNL 463 Query: 633 LSNTRHHGELGKPSTL---IVFRREDVLTMSVSNYGAAIPSAVRDNLFKPYKKEAMGNRR 689 L+N + G P+++ IV L + V + GA I SAVR +LF+P+ Sbjct: 464 LTNALRYAS-GAPASIRVYIVAMPGHRLELHVQDDGAQISSAVRAHLFEPFYTT------ 516 Query: 690 NARGLGLGLYIVSEIVSGHGGKIEVQC---DNH-------IITF 723 + +G GLGLY+ E+ +G + + D H +ITF Sbjct: 517 SNKGTGLGLYLARELCLNNGAMLNYEYRTDDEHGSPSGRFVITF 560 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,536,932 Number of extensions: 60746 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 214 Number of HSP's successfully gapped: 14 Length of query: 732 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 642 Effective length of database: 888,291 Effective search space: 570282822 Effective search space used: 570282822 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)