BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2116.p (300 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982481|ref|YP_001353348.1| signal transduction histidine k... 117 1e-27 gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons... 109 3e-25 gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/re... 103 2e-23 gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 96 3e-21 gi|152982741|ref|YP_001352306.1| hybrid two-components system re... 94 1e-20 >gi|152982481|ref|YP_001353348.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 459 Score = 117 bits (292), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 139/270 (51%), Gaps = 16/270 (5%) Query: 40 RQTLEAARLQQQERQTLL----QAERTARAEGQRASRIKEQFVATLSQDLRTPLNAILGW 95 + LEA +Q +E L + +A+ + A+ +E+F++ L+ +LR PL I Sbjct: 59 KHVLEALVVQLREANEHLVLAASGAQDMQAKAESANHRQEEFLSMLAHELRNPLAPIAMA 118 Query: 96 AQYLLR-DAADPV--KLHKGLQVIERNARLQAQLVEELLDMNRILSGKLRIATEQITLEE 152 A L + A P+ KLH +I R A LV++L+D +R+ +G + + + L E Sbjct: 119 ADLLGKISTAHPLLPKLHG---IISRQVSHMAHLVDDLVDASRVSTGNITLQKRSLLLAE 175 Query: 153 VMADAVEEVRSAAVAKTIQIDATSP-ASGVVLGDRTRLRQILCKLLINAIRFTPPQGRVV 211 ++ AVE + +T Q+ + P AS ++ GD RL Q L+INA +FTP G + Sbjct: 176 IIESAVETSQPFIDKRTQQLTISMPDASIIIHGDLVRLAQAFANLIINATKFTPVDGHID 235 Query: 212 LCSHQRQDEIELEVSDTGRGLAPALLAHLLE-----PDGPSHAGAGLGLGLAVVRQLVEL 266 + + +++ + D G G+A + ++ E P + GLG+GL++VR +VE+ Sbjct: 236 ILVQLQTSTVKVVIKDDGVGIAADIQPYIFELFRQGPLSLDRSQGGLGIGLSLVRTVVEM 295 Query: 267 HGGRLRAESPGPGLGASFYVALPLARPAIK 296 H G + S G LG+ F V LP+A IK Sbjct: 296 HTGTVSVYSAGADLGSEFTVELPIAAEFIK 325 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 109 bits (272), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/268 (33%), Positives = 135/268 (50%), Gaps = 12/268 (4%) Query: 31 RVLGQHALQRQT-LEAARLQQQERQTLLQAERTARAEGQRASRIKEQFVATLSQDLRTPL 89 R L Q L RQ L + +R A ++A+ + A++ K ++VA +S +LR+PL Sbjct: 605 RHLAQDDLNRQNELLTQEIDAHQRTD--AALQSAKEAAESANQAKTRYVAGISHELRSPL 662 Query: 90 NAILGWAQYLLRDAADPVKLHKGLQVIERNARLQAQLVEELLDMNRILSGKLRIATEQIT 149 N+ILG++Q LL++ +Q I+R+ LV+ELLD+ RI + ++R+ I Sbjct: 663 NSILGYSQILLKNEQLDAAPRTAIQTIQRSGEHLLGLVDELLDLARIEADRMRLEPAPIL 722 Query: 150 LEEVMADAVEEVRSAAVAKTIQIDATSPAS--GVVLGDRTRLRQILCKLLINAIRFTPPQ 207 + D + VR A AK +++ T VL D RLRQIL LL NA+RFT Sbjct: 723 FAAFIDDLLSMVRPQAEAKGLRLQYTHGGDLPHYVLADGKRLRQILINLLTNALRFT-DT 781 Query: 208 GRVVLCSHQRQDEIELEVSDTGRGLAPALLAHLLEPDGPSHAG-----AGLGLGLAVVRQ 262 G V L + +V DTG G+A + +P AG G GLGLA+ + Sbjct: 782 GSVTLHVECTGVSMRFDVIDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEK 841 Query: 263 LVELHGGRLRAESPGPGLGASFYVALPL 290 L+ + G L S G G++F V LPL Sbjct: 842 LILMMNGSLNLIST-QGQGSTFVVRLPL 868 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 125/237 (52%), Gaps = 13/237 (5%) Query: 63 ARAEGQRASRIKEQFVATLSQDLRTPLNAILGWAQYLLRDAADPVKLHKGLQVIERNARL 122 A+ E + A+R K +F+A +S ++RTP+N +LG Q L + +D + + L+ + +A Sbjct: 321 AKDEAESANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAETSDRTQ-REHLETAQYSAEA 379 Query: 123 QAQLVEELLDMNRILSGKLRIATEQITLEEVMADAVEEVRSAAVAKTIQIDATSPAS--G 180 ++ ++LD +++ SG L+ Q L + M + + S + ++ + PA Sbjct: 380 LLSILNDILDFSKLESGNLQFEAAQFDLLKTMDSVINLMASRSCDASLALAVECPAEIPR 439 Query: 181 VVLGDRTRLRQILCKLLINAIRFTPPQG---RVVLCS-HQRQDEIELEVSDTGRGLAPAL 236 +++GD RLRQ+L L+ NA++FT G +V L + + Q + V D+G G+AP Sbjct: 440 MLVGDANRLRQVLLNLINNALKFTEQGGVTLKVALLNLNAGQARMRFSVIDSGIGIAPEA 499 Query: 237 LAHLLE-----PDGPSHAGAGLGLGLAVVRQLVELHGGRLRAESPGPGLGASFYVAL 288 A L + + S G GLGL++ +++V++ GG + S G G+ F+ L Sbjct: 500 QARLFQAFSQADNSISRRFGGTGLGLSICKKIVDMQGGSIGVHS-AEGKGSEFWFEL 555 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 8/233 (3%) Query: 70 ASRIKEQFVATLSQDLRTPLNAILGWAQYLLRDAADPVKLHKGL-QVIERNARLQAQLVE 128 + R++ +A +S DLRTPL A++G ++ L R + + L + A LV Sbjct: 667 SERLRNSLLAAISHDLRTPLTALVGLSESLTRSKPELAAAQQELAHALHEEALRMGNLVT 726 Query: 129 ELLDMNRILSGKLRIATEQITLEEVMADAVEEVRSAAVAKTIQIDATSPASGVVLGDRTR 188 LLDM RI SG++++ + EEV+ ++ V+S + +P +V D Sbjct: 727 NLLDMARIQSGEVKLNLQWQQFEEVVGSSLRAVQSLLGRHQVHTR-LAPGLPLVNFDAVL 785 Query: 189 LRQILCKLLINAIRFTPPQGRVVLCSHQRQDEIELEVSDTGRGLAP----ALLAHLLEPD 244 + ++LC LL NA ++TP ++ + + +++ V D G GL P A+ + Sbjct: 786 IERVLCNLLENASKYTPAGSQITIAAELSGQYLDVAVYDNGPGLPPGQEEAIFEKFTRGE 845 Query: 245 GPSHAGAGLGLGLAVVRQLVELHGGRLRAESPGPGLGASFYVALPLARPAIKP 297 S A G+GLGLA+ R ++E H G +R P GA+ LPL P P Sbjct: 846 RES-ATPGVGLGLAICRAIIEAHHGTIRG-GHSPQGGAAIIFTLPLGTPPAMP 896 >gi|152982741|ref|YP_001352306.1| hybrid two-components system response regulator and sensor kinase [Janthinobacterium sp. Marseille] Length = 948 Score = 93.6 bits (231), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 133/256 (51%), Gaps = 24/256 (9%) Query: 49 QQQERQTLLQAERTARAEGQRASRIKEQFVATLSQDLRTPLNAILGWAQ-YLLRDAADPV 107 +Q ++LL+A+ A A+ K F+ T+S +LRTPL+ +LG + + L D Sbjct: 453 HKQIHESLLKAKLHA----DDANTAKTLFLTTMSHELRTPLHGLLGALELFSLTAVTDQQ 508 Query: 108 KLHKGLQVIERNARLQAQLVEELLDMNRILSGKLRIATEQIT----LEEVMADAVEEVRS 163 +++ L +++++ + + V + LD+ RI +G + T + LEEV+A Sbjct: 509 RMY--LHAMQQSSSILLKTVSQTLDIARIEAGAFELETTAFSSLALLEEVIAAYAAPAER 566 Query: 164 AAVAKTIQIDATSPASGVVLGDRTRLRQILCKLLINAIRFTPPQGRVVLCSHQRQDE--- 220 A+ D P +++GD TR++QIL L+ NAI+FT G+VVL S E Sbjct: 567 KALCICGVPDPAIPE--LLVGDVTRIKQILNNLMSNAIKFT-DSGQVVLRSRLLNLEHGM 623 Query: 221 --IELEVSDTGRGLAPALLAHLLEP----DGPSHAGAGLGLGLAVVRQLVELHGGRLRAE 274 I L+V D+GRG+ L + EP + + +G GLGL++ R+ ++ GG + A Sbjct: 624 ATIVLQVEDSGRGIDQVHLGRIFEPFYQVEQNAQLKSGTGLGLSICRRFAQMMGGTIWAM 683 Query: 275 SPGPGLGASFYVALPL 290 S PG G SF + + L Sbjct: 684 SE-PGSGTSFSLTVSL 698 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 574,123 Number of extensions: 19156 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 25 Length of query: 300 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 217 Effective length of database: 914,170 Effective search space: 198374890 Effective search space used: 198374890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)