BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2115.p
         (153 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980067|ref|YP_001352750.1| two-components system response ...    95   2e-21
gi|152980825|ref|YP_001354044.1| heavy metal response regulator ...    55   2e-09

>gi|152980067|ref|YP_001352750.1| two-components system response
           regulator [Janthinobacterium sp. Marseille]
          Length = 148

 Score = 94.7 bits (234), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 2/141 (1%)

Query: 1   MATEQSVNIILVEDDDGHALLVEKNLRRAGLVNGFTRLHDGQAALDYFF--GSELPRSEL 58
           M+  Q + I+L ED    A      L+  GL +    + DGQ  LDY F  G  + R   
Sbjct: 1   MSDLQKIQILLAEDTQSDAEATLLALKEVGLASNVVWVKDGQEVLDYVFCTGPFIGRVGG 60

Query: 59  QQLVVLLDVNMPRVNGVEVLRRMKQEPATVAIPVIMLTTTDDPREIARCYEVGCNVYITK 118
              +++LD+ MP+VNG++VL+ +K    T  IP+IMLT++ +  +I  CYE G N YI K
Sbjct: 61  VPTLIMLDLKMPKVNGLDVLKILKTTEKTRFIPIIMLTSSAEEPDITYCYEYGVNNYIVK 120

Query: 119 PVEYDDFIEAVRRLGFFLQVV 139
           PV    F E V R GF+  ++
Sbjct: 121 PVLPVKFAEEVSRAGFYWNLL 141


>gi|152980825|ref|YP_001354044.1| heavy metal response regulator
           [Janthinobacterium sp. Marseille]
          Length = 223

 Score = 55.1 bits (131), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 12/126 (9%)

Query: 7   VNIILVEDDDGHALLVEKNLRRAGLVNGFTRLHDGQAALDYFFGSELPRSELQQLVVLLD 66
           + I+LVED+      + K LR AG V  + R  DG   L      +L   E  +LV+L D
Sbjct: 1   MKILLVEDEVKSGEYLRKGLREAGFVVDWAR--DGAEGL------QLALQESYELVIL-D 51

Query: 67  VNMPRVNGVEVLRRMKQEPATVAIPVIMLTTTDDPREIARCYEVGCNVYITKPVEYDDFI 126
           V +P ++G ++LR +++   T   PV+ LT  D+  +  +  E+G + Y+ KP  + + I
Sbjct: 52  VMLPLLDGWQLLRELRKVRDT---PVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELI 108

Query: 127 EAVRRL 132
             VR L
Sbjct: 109 ARVRTL 114


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 340,542
Number of extensions: 13179
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 77
Effective length of database: 940,049
Effective search space: 72383773
Effective search space used: 72383773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)