BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2114.p (534 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982447|ref|YP_001351748.1| two-component system sensor his... 74 2e-14 gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/re... 73 4e-14 gi|152980724|ref|YP_001353975.1| two-component system sensor kin... 70 4e-13 gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons... 67 3e-12 gi|152981457|ref|YP_001354520.1| two-component sensor histidine ... 65 7e-12 >gi|152982447|ref|YP_001351748.1| two-component system sensor histidine kinase ColS [Janthinobacterium sp. Marseille] Length = 414 Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 95/351 (27%), Positives = 141/351 (40%), Gaps = 64/351 (18%) Query: 179 QTWLLILAVLG-SIVTAALASLAFTRSISRRIAVLITNAQRLADGQTLAARVGGNDEICQ 237 T LLI LG VT+ L S+ + ++RI +T LAA V ND Sbjct: 121 NTELLIFISLGVGFVTSILLSIGLGLASAKRIVAPVT---------ALAAAVERND---- 167 Query: 238 LDDALHRSSERLAEASRQALGYRQELEQRARELADVNHDLRQQTQDNEMFIYSVSHDLRS 297 A + +L E+ AR A +L++ D ++F VSH+LR+ Sbjct: 168 ------------APSDLPSLDKENEIGILARAFAKRTDELQRFLADEKLFTGDVSHELRT 215 Query: 298 PLVNLQGFSKEITHATRDLLDEVERLHLPEADRNRLRALVEEDIHTSLRFIQNAVTRSAG 357 PL + G S+ + D DE L A+R R R A R Sbjct: 216 PLTIMLGASELLKTKLADTPDE-----LAVAERIR-------------RVASEASER--- 254 Query: 358 IIDAMLRLSRAGRVEYQPVMLDMHAIAQRIVSAMNGSIRAKAAQVEIE-PDLPPAYGDPT 416 + A+L LS++ + L + + +R + + K +++ P Y P Sbjct: 255 -VGALLLLSQSPDM-LGGSQLSLTHLIEREIERCQQLLADKPVELQFHAPQDAWVYARPE 312 Query: 417 SVEQVLGNLVANAVNYLDPARQGHITIGHVRQADNIAAAPSLVTYFVRDNGLGIPAAYMD 476 +GNL+ NA Y +G + + AD + + DNG GIP Sbjct: 313 LAGIAIGNLLRNACQY---TEKGSVKVW--LSADKL---------IIEDNGPGIPENVRS 358 Query: 477 KMFIAFQRLHGNAAKGEGIGLALVKRVVERHGGRIWVESVEGQGSCFFVAL 527 ++F F R H N G G+GLA+VKRVV+ G I E+ E GS F V Sbjct: 359 RLFDRFVRGHDNQHVGSGLGLAIVKRVVDHMGWEIRYENPEAGGSRFIVTF 409 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 125/271 (46%), Gaps = 36/271 (13%) Query: 265 QRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLVNLQGFSKEITHATRDLLDEVERLH 324 +R R+L+ + + F+ +SH++R+P+ + G + A + D +R H Sbjct: 313 ERTRDLSIAKDEAESANRAKSEFLAVMSHEIRTPMNGMLGM---MQLALAETSDRTQREH 369 Query: 325 LPEADRNRLRALVEEDIHTSLRFIQNAVTRSAGIIDAMLRLSR--AGRVEYQPVMLDMHA 382 L A Q + I++ +L S+ +G ++++ D+ Sbjct: 370 LETA--------------------QYSAEALLSILNDILDFSKLESGNLQFEAAQFDLLK 409 Query: 383 IAQRIVSAMNG-SIRAK-AAQVEIEPDLPPAY-GDPTSVEQVLGNLVANAVNYLDPARQG 439 +++ M S A A VE ++P GD + QVL NL+ NA+ + + QG Sbjct: 410 TMDSVINLMASRSCDASLALAVECPAEIPRMLVGDANRLRQVLLNLINNALKFTE---QG 466 Query: 440 HITIGHVRQADNIAAAPSLVTYFVRDNGLGIPAAYMDKMFIAFQRLHGNAAK---GEGIG 496 +T+ N+ A + + + V D+G+GI ++F AF + + ++ G G+G Sbjct: 467 GVTLKVALL--NLNAGQARMRFSVIDSGIGIAPEAQARLFQAFSQADNSISRRFGGTGLG 524 Query: 497 LALVKRVVERHGGRIWVESVEGQGSCFFVAL 527 L++ K++V+ GG I V S EG+GS F+ L Sbjct: 525 LSICKKIVDMQGGSIGVHSAEGKGSEFWFEL 555 >gi|152980724|ref|YP_001353975.1| two-component system sensor kinase of the phosphate regulon [Janthinobacterium sp. Marseille] Length = 443 Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 123/266 (46%), Gaps = 45/266 (16%) Query: 273 VNHDLRQQTQDNEM---FIYSVSHDLRSPLVNLQGFSKEITHATRDLLDEVERLHLPEAD 329 V HD + + M FI + SH+LR+PL + GF EI +L +V HL Sbjct: 192 VTHDATESDRIEMMRRDFIANASHELRTPLTVINGF-LEIAQGQPNLDPDVRMSHL---- 246 Query: 330 RNRLRALVEEDIHTSLRFIQNAVTRSAGIIDAMLRLSRAGRVEY--QPVMLDMHAIAQRI 387 ++E+ R +++ ML L+R ++Y +P +++ + ++I Sbjct: 247 ----NLMIEQG------------KRMQNLVEDMLTLTRLESIDYPLRPEHVNIGNLLRQI 290 Query: 388 VS---AMNGSIRAKAAQVEIEPDLPPAYGDPTSVEQVLGNLVANAVNYLDPARQGHITIG 444 + A++G + VE PD+ G + GNLV+NAV Y G I I Sbjct: 291 LQEAEALSGGRHVISLTVE-GPDI---QGSTDELRSAFGNLVSNAVRY--TPEGGRIDI- 343 Query: 445 HVRQADNIAAAPSLVTYFVRDNGLGIPAAYMDKMFIAFQRLHGNAAK---GEGIGLALVK 501 + + P + V+D+G+GI A ++ ++ F R+ + ++ G G+GLA+VK Sbjct: 344 ---KWQDAGNGPQ---FSVKDSGIGIRAEHIVRLTERFYRVDKSRSRETQGTGLGLAIVK 397 Query: 502 RVVERHGGRIWVESVEGQGSCFFVAL 527 V+ RHG + +ES GS F V Sbjct: 398 HVLLRHGAVLGIESQPDAGSTFTVKF 423 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 126/272 (46%), Gaps = 46/272 (16%) Query: 265 QRARELADVNHDLRQQTQDNEMFIYSVSHDLRSPLVNLQGFSKEITHATRDLLDEVERLH 324 Q A+E A+ Q ++ +SH+LRSPL ++ G+S+ + + LD R Sbjct: 634 QSAKEAAE------SANQAKTRYVAGISHELRSPLNSILGYSQILLK--NEQLDAAPR-- 683 Query: 325 LPEADRNRLRALVEEDIHTSLRFIQNAVTRSAGIIDAMLRLSR--AGRVEYQPVMLDMHA 382 T+++ IQ + G++D +L L+R A R+ +P + A Sbjct: 684 ------------------TAIQTIQRSGEHLLGLVDELLDLARIEADRMRLEPAPILFAA 725 Query: 383 IAQRIVSAMNGSIRAKAAQVEIE--PDLP-PAYGDPTSVEQVLGNLVANAVNYLDPARQG 439 ++S + AK +++ DLP D + Q+L NL+ NA+ + D G Sbjct: 726 FIDDLLSMVRPQAEAKGLRLQYTHGGDLPHYVLADGKRLRQILINLLTNALRFTD---TG 782 Query: 440 HITIGHVRQADNIAAAPSLVTYFVRDNGLGIPAAYMDKMFIAFQRLHGNAAKGE---GIG 496 +T+ HV + ++ + + V D G+GI ++F F+R +GE G+G Sbjct: 783 SVTL-HV-ECTGVS-----MRFDVIDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLG 835 Query: 497 LALVKRVVERHGGRIWVESVEGQGSCFFVALP 528 LA+ ++++ G + + S +GQGS F V LP Sbjct: 836 LAITEKLILMMNGSLNLISTQGQGSTFVVRLP 867 >gi|152981457|ref|YP_001354520.1| two-component sensor histidine kenase [Janthinobacterium sp. Marseille] Length = 763 Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 14/188 (7%) Query: 348 IQNAVTRSAGIIDAMLRLSRAGRVEYQPVMLDMHAIAQRIVSAMNGSIRAKAAQVEIEPD 407 I+ +V + + D + L++A YQ D ++ M +K+ + ++ D Sbjct: 581 IEKSVETTLNLADDFVHLAKAESQSYQLQDTDFSSLLAEAADDMWAFAHSKSISIVLDAD 640 Query: 408 LPPAYG------DPTSVEQVLGNLVANAVNYLDPARQGHITIGHVRQADNIAAAPSLVTY 461 G D + + + LGNL++NA+ + + +G + R + ++ S+V + Sbjct: 641 ---EVGNCWLNVDRSLLIRALGNLLSNAIKF---SPKGSEIVCSARPVHS-SSGSSIVCH 693 Query: 462 FVRDNGLGIPAAYMDKMFIAFQRLHGNAAKGEGIGLALVKRVVERHGGRIWVESVEGQGS 521 + D+G GI + ++F F R G G+GLA VK VVERH G I V S G+GS Sbjct: 694 -ISDHGKGISERDLPQIFSPFLRADEQDRDGVGLGLAFVKMVVERHNGTIEVSSTVGKGS 752 Query: 522 CFFVALPA 529 F + LP Sbjct: 753 TFTITLPC 760 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,167,552 Number of extensions: 46607 Number of successful extensions: 283 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 265 Number of HSP's successfully gapped: 20 Length of query: 534 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 446 Effective length of database: 895,685 Effective search space: 399475510 Effective search space used: 399475510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)