BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2113.p
         (119 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980368|ref|YP_001352729.1| hypothetical protein mma_1039 [...    88   2e-19

>gi|152980368|ref|YP_001352729.1| hypothetical protein mma_1039
           [Janthinobacterium sp. Marseille]
          Length = 173

 Score = 87.8 bits (216), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 75/171 (43%), Gaps = 59/171 (34%)

Query: 1   MTTIIAARFDLQEDAAQAVTALTEAGFAQRHISRFFVNPAGQHDRFALGGDRDKSPGAQD 60
           MT IIA  F  Q++A  A+ AL  AG     I+ F+VNP GQHD F +GGDRD+SPG++D
Sbjct: 1   MTVIIAGHFQQQDEAKAALAALHRAGAPDGQITSFYVNPPGQHDMFPIGGDRDESPGSED 60

Query: 61  TD---------------------------SGVVTGV-----------ADEAKQDKALR-- 80
           +D                           +G + G             DE K    LR  
Sbjct: 61  SDKGTAAGLAAGGLIGGAAGTAAGPLGAVTGALVGAHIGSLVGSLSSTDEEKDIPPLRKA 120

Query: 81  -------------------LLRGLGAVDIERSSGTIRDGDWIDFDPLSAPV 112
                                R LGA  +ERS G I +GDW DF+PLS+PV
Sbjct: 121 GMLVAVTVTSEEEEEKAIDTFRALGAQCVERSEGQIVNGDWTDFNPLSSPV 171


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 306,163
Number of extensions: 12284
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 47
Effective length of database: 954,837
Effective search space: 44877339
Effective search space used: 44877339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)