BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2112.p
         (565 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980462|ref|YP_001354002.1| glucose-6-phosphate isomerase [...   573   e-164

>gi|152980462|ref|YP_001354002.1| glucose-6-phosphate isomerase
           [Janthinobacterium sp. Marseille]
          Length = 546

 Score =  573 bits (1477), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/545 (51%), Positives = 370/545 (67%), Gaps = 10/545 (1%)

Query: 19  RESLTDKSAWIALQEHYQDSARHFQLERLFAADLQRGQSLVAEGAGIYLDYSKNLVSGQT 78
           R +LT  +A+ ALQ+H+ ++ +  Q+  LFA D  R   L  EGAG++LDYSKN+V  +T
Sbjct: 2   RTTLTATAAFQALQQHHTEN-KGRQVRHLFAQDPARFDKLSVEGAGLFLDYSKNIVDDKT 60

Query: 79  MSLLIQLARQCGLQDRIEAMFRGDRINVTEQRAVLHTALRKPAGEQLVVEGEEVVAQVQQ 138
           M+LL  LAR+  ++ + +AMF G  +N TE RAVLHTALRKP  E+L++  +++V ++ +
Sbjct: 61  MTLLYALARETEVEAQRDAMFAGKEVNRTEHRAVLHTALRKPRNEKLLLGQQDIVPEIHE 120

Query: 139 VLTRMEAFAEQVRSGQWTGHTGGRIRHVVNIGIGGSDLGPSMAQEALRAYSQHDLNLHFL 198
           VL RM  F+E+VRSG W G     I  +VNIGIGGS LGP M  +ALR+++   LN HF+
Sbjct: 121 VLDRMAVFSERVRSGAWRGFDDREITDIVNIGIGGSYLGPKMTCQALRSFAHPRLNTHFV 180

Query: 199 SDVDGTALLETVRTLPAQETLFIVCSKTFTTLETLTNAQAARQWLVQQLGDEAAVARHFV 258
           S+VDG  L   +  +    TLFI+ SK F T ET+ NAQ+AR W ++    E+ +++HFV
Sbjct: 181 SNVDGHDLDALLSRINPATTLFIIASKGFNTAETMMNAQSARAWFLRH-ATESDLSKHFV 239

Query: 259 GVTSNIEEASRFGIDPTNMFGFWDWVGGRYSMTSAIGLSTMIAIGAQHFRQLLAGFHAMD 318
            V+++++    FGI P NMF FWDWVGGRYS+ SAIGL+ M++IG + F+  LAG HAMD
Sbjct: 240 AVSTHLDAVQAFGIAPENMFPFWDWVGGRYSVWSAIGLALMLSIGPECFKDFLAGAHAMD 299

Query: 319 EHFRTTPLEANLPVILGMLTVWYTNFFGARSQAVLPYSQSLKRLPAYLQQLTMESNGKQV 378
            HF+ TPLE NLPVIL ++ +W  NF G+ S ++ PY Q L+  P YLQQL MESNGK V
Sbjct: 300 RHFQDTPLEQNLPVILALIGIWNRNFLGSSSISIAPYHQDLRLFPGYLQQLEMESNGKSV 359

Query: 379 TRQGQSVHYQTSPVYWGDNGINGQHSFYQLLHQGTQMVPCDFIGFCRPVQALGQQHALLM 438
              G      T PV WGD G NGQH+++QLLHQGT ++  DFI   +P  AL Q   LL+
Sbjct: 360 QVDGAKTSTTTCPVIWGDVGTNGQHAYFQLLHQGTDIMAVDFIAALKPTHALEQHQVLLL 419

Query: 439 ANMFAQSEALAFGKTAQQVRQE--------GSSEELTPHRVFPGNRPSNSLLIDQLTPYS 490
           AN FAQSEA   GK A++VR +           E+L PHR+FPGNRPSN++L+D L P +
Sbjct: 420 ANCFAQSEAFMRGKNAEEVRADMQAQGLPAAEIEKLLPHRIFPGNRPSNTILMDTLNPGA 479

Query: 491 LGTLVALYEHSVFTQGVIWDIDSFDQWGVELGKQLARRTARELIDHAQPLHHDSSTNALI 550
           LG L+ALYEH VF QG IW I+SFDQWGVELGK LA+  A EL D A+P  HDSSTN LI
Sbjct: 480 LGALIALYEHKVFVQGAIWGINSFDQWGVELGKLLAKNIAAELGDKAKPEQHDSSTNGLI 539

Query: 551 HRYRA 555
            R RA
Sbjct: 540 ARARA 544


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,246,163
Number of extensions: 49741
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 477
Effective length of database: 895,685
Effective search space: 427241745
Effective search space used: 427241745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)