BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2111.p (393 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982756|ref|YP_001352256.1| hypothetical protein mma_0566 [... 254 7e-69 gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [... 104 8e-24 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 103 2e-23 gi|152982370|ref|YP_001353570.1| hypothetical protein mma_1880 [... 102 6e-23 gi|152981463|ref|YP_001352343.1| signal transduction protein [Ja... 93 3e-20 >gi|152982756|ref|YP_001352256.1| hypothetical protein mma_0566 [Janthinobacterium sp. Marseille] Length = 421 Score = 254 bits (649), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 141/387 (36%), Positives = 217/387 (56%), Gaps = 10/387 (2%) Query: 1 MNAATASIALALVQFCGGVVMAGLFLNMPREHCTRQWALSGGLSASGICIMVAGYAGLGG 60 M++ TA IAL LVQFC +VMAG+F P E CT+ WALSG A G+ I + Sbjct: 43 MDSFTAGIALILVQFCIALVMAGVFYTTPSEKCTKYWALSGAWIAFGVLIAIVN----NR 98 Query: 61 AWNPLLLLMGNTSLFAGCLTAWSGLRSFYQRRTGRWPVLMVGVYAFLFSLLLLYRVSFTN 120 P +L G ++ G + W G+R+FY+++ +W + + + S+L + +F Sbjct: 99 LHRPAFILNGTGAVIIGLIFQWHGIRAFYKKQPQKWGWFICIAFVAILSMLFMLGANFQQ 158 Query: 121 RAYLAMFALQVVFWLVLIEFVRGMSGPGGRRYGGWTFGRCIGIFSLFIFITTHLVRFVLS 180 R+ L VF L+ + F G G TF + + + ++ + +T +++R +++ Sbjct: 159 RSILVS---STVFLLLGLSFHAIWQGQSG---APKTFVQALVLGAIVLLMTGNVLRIIIA 212 Query: 181 FSQPELFIPPAMSTIGVALIYMIPLCGSLLFSVSLMMIYFERLLADKQRLATEDELTGTL 240 Q IP S+ +A+ +MIP G++LFS+ L+++YFER + + + LAT DEL+ L Sbjct: 213 SLQIAGSIPLERSSFEIAVAFMIPTVGTVLFSIGLLLLYFERTVEENRHLATHDELSKLL 272 Query: 241 NRRELVRCGELALAQAVQTRQRLTLAFIDVDHFKLINDTHGHLAGDRVLADIGILLRKHC 300 NRR +V GE LA A + LT+AFID+D FK ND GH AGD V+ ++ +L++ C Sbjct: 273 NRRAIVSAGEYNLASATRLGHELTIAFIDIDMFKHFNDKFGHAAGDTVIQEVAAILQQTC 332 Query: 301 AQGGLIGRYGGEEFCAVFPGWSEEQARASAQHLLETVRNHVFVHGQEVTISVGLAVLQPG 360 ++GRYGGEEF + PG + + A + L++ VR + F+ VTIS GL L Sbjct: 333 RTIDMVGRYGGEEFLIILPGVNRDAAAIVGERLVDAVRQYRFMGIHPVTISAGLTTLPKT 392 Query: 361 QVMSWDQLVHEADQALYRAKSEGRNAF 387 + +W QLV AD ALY AK GRN + Sbjct: 393 EQCTWTQLVRRADAALYEAKGLGRNRY 419 >gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [Janthinobacterium sp. Marseille] Length = 417 Score = 104 bits (260), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 5/178 (2%) Query: 211 FSVSLMMIYFERLLADKQRLATEDELTGTLNRRELVRCGELALAQAVQTRQRLTLAFIDV 270 +++ +M+ + +LA+ + A D LT L+R+ L + +A + + L+L ID+ Sbjct: 224 MTMAAVMLTHDAMLANLEDAANHDHLTEALSRKRLEAVAREQILRAGKFGRPLSLLIIDL 283 Query: 271 DHFKLINDTHGHLAGDRVLADIGILLRKHCAQGGLIGRYGGEEFCAVFPGWSEEQARASA 330 DHFK INDT+GH GD VL + + R G +GR GGEEF + P A A A Sbjct: 284 DHFKRINDTYGHAGGDEVLREFARMTRASLRDGDALGRLGGEEFGILLPNTDTVGALAIA 343 Query: 331 QHLLETVRNHVF--VHGQ-EVTISVGLAVLQPGQVMSWDQLVHEADQALYRAKSEGRN 385 + L E H+ G+ +IS+G+A + G+ ++D+L AD+ALY AK+ GRN Sbjct: 344 RRLREDSERHLISGTFGECHYSISIGIATWRDGE--NFDRLSIRADRALYTAKNSGRN 399 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 4/163 (2%) Query: 226 DKQRLATEDELTGTLNRRELVRCGELALAQAVQTRQRLTLAFIDVDHFKLINDTHGHLAG 285 + +RL+ D LTG NRR L A+ + Q L++ D+D FK IND +GH AG Sbjct: 440 EAERLSRVDALTGAFNRRYFNEVAALEFAKVRRLHQPLSVISFDIDLFKQINDNYGHAAG 499 Query: 286 DRVLADIGILLRKHCAQGGLIGRYGGEEFCAVFPGWSEEQARASAQHLLE-TVRNHVFVH 344 D V+ + R + + R GGEEF + PG + EQA A+A+ L E + V Sbjct: 500 DEVIKAAARVSRNAVREIDFVARIGGEEFAILLPGSTIEQAAATAERLRELVIAEQVSYQ 559 Query: 345 GQ--EVTISVGLAVLQPGQVMSWDQLVHEADQALYRAKSEGRN 385 G+ T S G+A L+ S++ L+ AD+ +YRAK+ GRN Sbjct: 560 GKLLAFTASFGVAQLKDSD-QSFEALLQRADEMMYRAKNLGRN 601 >gi|152982370|ref|YP_001353570.1| hypothetical protein mma_1880 [Janthinobacterium sp. Marseille] Length = 389 Score = 102 bits (253), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 4/178 (2%) Query: 209 LLFSVSLMMIYFERLLADKQRLATEDELTGTLNRRELVRCGELALAQAVQTRQRLTLAFI 268 +L V++++ + + + +RLAT D LTG LNRR + + LA +V+ RQ + L + Sbjct: 202 VLSVVAILLAHRDEAARELERLATLDGLTGALNRRAWLLQSGIELAGSVRYRQPIGLLLL 261 Query: 269 DVDHFKLINDTHGHLAGDRVLADIGILLRKHCAQGGLIGRYGGEEFCAVFPGWSEEQARA 328 D+D+FK INDTHGH GDR L LR G L RYGGEEFC + A Sbjct: 262 DLDYFKQINDTHGHAVGDRALQLFVTGLRTVSRTGDLFCRYGGEEFCVLLKCADLASVTA 321 Query: 329 SAQHLLETVRNHVFVH-GQEVTISVGLAVLQ-PGQVMSWDQLVHEADQALYRAKSEGR 384 Q + + + H G +++ S G+ + + G + D ++ AD ALY AKS+GR Sbjct: 322 YDQRMRQWLAQHSPQELGFKLSYSAGITMREHDGDTI--DTMLQRADVALYEAKSQGR 377 >gi|152981463|ref|YP_001352343.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 457 Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 7/164 (4%) Query: 228 QRLATEDELTGTLNRRELVRCGELALAQAVQTRQRLTLAFIDVDHFKLINDTHGHLAGDR 287 QRLA D LTG NRR L + A+A A + + F+D+D FK +ND+ GH AGDR Sbjct: 293 QRLAQYDVLTGLPNRRLLDSRLKKAIAGANGHHHLVAVCFLDLDGFKEVNDSLGHAAGDR 352 Query: 288 VLADIGILLRKHCAQG-GLIGRYGGEEFCAVFPGWSE-EQARASAQHLLETVRNHVFVHG 345 +L + L +HC + + R+GG+EF + + ++ + ++ T + V + G Sbjct: 353 LLQQMAQRL-QHCMRATDTLARFGGDEFVVILDRLNSIDECEKILERMIHTAQEPVHMDG 411 Query: 346 QEVTI--SVGLAVLQPGQVMSWDQLVHEADQALYRAKSEGRNAF 387 EV + S+G+A+ QPG + +QL+ AD A+Y+AK G+N + Sbjct: 412 NEVIVSASIGVAMFQPG--VEREQLLKRADTAMYQAKQLGKNKY 453 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.141 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 849,296 Number of extensions: 34155 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 29 Length of query: 393 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 308 Effective length of database: 906,776 Effective search space: 279287008 Effective search space used: 279287008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)