BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2110.p (313 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 94 8e-21 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 91 9e-20 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 90 2e-19 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 88 8e-19 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 78 8e-16 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 94.4 bits (233), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 85/141 (60%), Gaps = 2/141 (1%) Query: 6 LRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDAGKVFY 65 LR FVA+VD GS +RAA +H+ Q ++QQIR+LE++ LL+RS + V T G+ Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPEGESLL 66 Query: 66 EHALAILKQVQDAKQAVAQSTDKPAGTVALGIPQSVSNALALPLLNAVRSTYPDITLQLT 125 +A IL+ + +A + V QS ++ G + LG+P+ + P+L A YP I L++T Sbjct: 67 GYARRILQLMDEAVEQVTQSVEQ--GEIQLGVPEDFAAHALTPVLAAFAGNYPGIRLEIT 124 Query: 126 EELTGNLITQLKSGRINLAVL 146 L+ +L + G+++LA++ Sbjct: 125 SGLSHDLYRMFQQGKLDLALV 145 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 90.9 bits (224), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 146/304 (48%), Gaps = 24/304 (7%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 ++LR LRYFV + + G L++AA+ + I QP L+QQIR LE E+ L R +G+ T++ Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPAGTVALGIPQSVSNALALP-LLNAVRSTYPD 119 G+ A IL+QV + V + + +G +A+G +S + +P ++ A R P Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 120 ITLQLTEELTGNLITQLKSGRINLAVLFDD-GQLASFAATPMIEEEMMY---ITRAKSQY 175 + + + E T L+ L+ R+++A + G A M+ EEM+ IT +Q Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQR 183 Query: 176 GVSGRRRVPLTLALQAPLIL------PGLAHGVRPRIEQLVRSQGMSLENVIEINSVAIL 229 R+ +PLT + IL PGL V R+ G S V E Sbjct: 184 ----RKSLPLTALAEDDFILNRRPSGPGLYDSV----IAACRAAGFSPRVVQEAKKNLST 235 Query: 230 KSAILADIGATILPVAPLLADIERGEMVAHPIAGEPISRTLALCASRNIPLTTAAAAVER 289 S + A +G +I+P + + ++ E+V + P R A R+ P + AA ER Sbjct: 236 LSLVAAGLGVSIVPAS--MRHVQLKEVVYLKLEQAPDLRAPLHLAYRDEPQSGAA---ER 290 Query: 290 LVLD 293 ++++ Sbjct: 291 MIIE 294 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 130/288 (45%), Gaps = 8/288 (2%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 MELR LRYF+A S +RA+ LHI QP L+ QI+Q+EDE+ QL R + V T A Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPAGTVALGIPQSVSNALALPLLNAVRSTYPDI 120 G++F +A L +V A+ + + G V G+ S P+L YP I Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLASFAATPMIEEEMMYITRAKSQYGVSGR 180 + + +G + +L G ++ V + P+ + + + + G Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALV--VGDHHPLVGS 178 Query: 181 RRVPLTLALQAPLILPGLAHGVRPRIEQLVRSQGMSLENVIEINSVAILKSAILADIGAT 240 + L + L++ + R ++ ++ + G++ V+E+N++ + + + AT Sbjct: 179 AGITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATVRHSSLAT 238 Query: 241 ILPVAPLLADIERGEMVAHPIAGEP-ISRTLALCASRNIPLTTAAAAV 287 IL L D G H + P ++ T+ L RN L+ AA A+ Sbjct: 239 ILSAN--LVDEMPG---LHQVPLTPTVTHTVGLFTRRNSHLSAAARAL 281 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 87.8 bits (216), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/302 (22%), Positives = 133/302 (44%), Gaps = 13/302 (4%) Query: 3 LRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDAGK 62 LRQL+ F + H S SRAA LH+ QPA++ Q+++LE+ L + + + T G Sbjct: 6 LRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGS 65 Query: 63 VFYEHALAILKQVQDAKQAVAQSTDKPAGTVALGIPQSVSNALALPLLNAVRSTYPDITL 122 ++ I++Q Q+A+ A+ Q G + + + + L+ RS + +TL Sbjct: 66 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISAGDYFFPRLLVEFARS-HQGVTL 124 Query: 123 QLTEELTGNLITQLKSGRINLAVLFD-----DGQLASFAATPMIEEEMMYITRAKSQYGV 177 L+ L+ Q+ S ++A++ D +FA P Y+ A + + Sbjct: 125 NLSVHNREGLLNQMTSNLTDIAIMVRPPTDMDTINEAFAPHP-------YVIVAAPDHPL 177 Query: 178 SGRRRVPLTLALQAPLILPGLAHGVRPRIEQLVRSQGMSLENVIEINSVAILKSAILADI 237 ++ +P++ +Q P ++ +E + + +EI S +K A++A + Sbjct: 178 VSQKNIPMSRLMQEPFVVREKGSDTWHSMEDGFGDRINDINVAMEIRSTETIKQAVIAGM 237 Query: 238 GATILPVAPLLADIERGEMVAHPIAGEPISRTLALCASRNIPLTTAAAAVERLVLDVTDQ 297 G + L + +++ G + + G P+ + +N L A A + +LD + Sbjct: 238 GVSFLSAHTISLELQAGSLAVLDVEGFPVMLNWYIVHRKNKRLPPVAQAFKNFLLDEGPE 297 Query: 298 LC 299 L Sbjct: 298 LI 299 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 77.8 bits (190), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 109/254 (42%), Gaps = 14/254 (5%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 M L +L+Y VA+ AA +AQP L+ I++LEDE+ L R + T Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPAGTVALGIPQSVSNALALPLLNAVRSTYPDI 120 G A +L+Q K+ Q+ D G LGI +++ L PL+ + P + Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQM 136 Query: 121 TLQLTEELTGNLITQLKSGRINLAVL---FDDGQLASFAATPMIEEEMMYITRAKSQYGV 177 L L E T L+ L+ G ++ A++ F D L P+ +E ++ + Sbjct: 137 PLVLQENFTVKLLELLRQGELDAAIVALPFPDQGL---LVQPVYDEP--FVVAVPKHHKW 191 Query: 178 SGRRRVPLTLALQAPLILPGLAHGVRPRIEQLV------RSQGMSLENVIEINSVAILKS 231 + R V ++L G H R ++ ++ + G + E +S+ ++ Sbjct: 192 ANRDSVSTDDLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRH 251 Query: 232 AILADIGATILPVA 245 + + IG T+LP A Sbjct: 252 MVASGIGITVLPQA 265 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 652,702 Number of extensions: 24500 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 30 Length of query: 313 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 230 Effective length of database: 914,170 Effective search space: 210259100 Effective search space used: 210259100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)