BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2106.p (477 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 243 3e-65 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 162 4e-41 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 151 7e-38 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 243 bits (619), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 156/463 (33%), Positives = 251/463 (54%), Gaps = 13/463 (2%) Query: 1 MKQH-FIDNRWVAPASGQSIPVIDPSDGQVFAAIARGNADDVERAVQAARLAYEGAWGKL 59 ++ H +I+ WV + S V +P+DG + A + E+A+QAA A+ K Sbjct: 15 LRNHAYINGAWVTGKA--SFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAK- 71 Query: 60 SAAERSRLLMKLAYKLQDHQEELAQLEGRDCGKPMKQARADAAAIVRYFEFYAGAADKLH 119 + ER+ ++ + + ++LA L + GKP+ ++R + + E++A A ++ Sbjct: 72 TGKERAGIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRVS 131 Query: 120 GHTIPYQ-AGYTVLTLREPHGVTAHIVPWNYPMQIFGRCVGGALAAGNTCVVKPAEDACL 178 G + + +T+++P GV A I PWN+P+ + R V A+AAG T V+KPAE L Sbjct: 132 GDVMASTWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPL 191 Query: 179 SILRVAELAAEVGFPAGALNIVTGYGHEA---GDLLVKHPDVDHVSFTGSPNVGKLVVRG 235 S L +AELA G P G +N+VT ++ G +L P V HVSFTGS VG++++ Sbjct: 192 SALAIAELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQ 251 Query: 236 AAEHHTPVTLELGGKSPQVVFEDADMEAMLPVVVNAIVQNAGQTCSAGSRLLVQRGAYEQ 295 A + LELGG +P +VF+DAD++A + + + +NAGQTC +R V Y+ Sbjct: 252 CAPTVKKIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDT 311 Query: 296 VLERLAGLFSQLKVGSS-QMDLDCGPLIRKTQQERVAGFLAEARRDGIPLVAQGEIAAGV 354 +++L +++KVG+ + + GPLI ++V +++A G ++ G+ A Sbjct: 312 FVQKLGAGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHA-- 369 Query: 355 PANGFYQAPALLRDVPPRHRLAQEEVFGPVLAAMPFEDEAHAIALANGTDYGLVASVWTR 414 G++ P +L ++ P + EE FGPV A + F+ E A+A AN TD+GL + ++R Sbjct: 370 -LGGYFYEPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSR 428 Query: 415 DGGRQMRLARAIRSGQVFINNYGAGGGVELPFGGVKASGHGRE 457 D GR R+A + G V IN G PFGGVK SG GRE Sbjct: 429 DIGRVWRVAEKLEYGMVGINT-GLISNEVAPFGGVKQSGLGRE 470 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 162 bits (410), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 141/490 (28%), Positives = 223/490 (45%), Gaps = 26/490 (5%) Query: 3 QHFIDNRWVAPASGQSIPVIDPSDGQVFAAIARGNADDVERAVQAARLAYEGAWGKLSAA 62 +H+I+ R A G+ V +P+ G+ A + + DV+ V A+ A + Sbjct: 8 KHYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAW-ADTAPL 66 Query: 63 ERSRLLMKLAYKLQDHQEELAQLEGRDCGKPMKQARADAAAIVRYFEFYAGAADKLHGH- 121 +R+R+L K ++ H ++LA R+ GK A+ + + EF G L Sbjct: 67 KRARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLKTQF 126 Query: 122 TIPYQAGYTVLTLREPHGVTAHIVPWNYPMQIFGRCVGGALAAGNTCVVKPAEDACLSIL 181 T G LR+P GVTA I P+N+P + ALA GNT ++KP+E L Sbjct: 127 TDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSPSL 186 Query: 182 RVAELAAEVGFPAGALNIVTGYGHEAGDLLVKHPDVDHVSFTGSPNVGKLV-VRGAAEHH 240 VAEL + G P G N++ G A D L++HPDV VSF GS + + + GAA Sbjct: 187 MVAELLQQAGLPDGVFNVLQG-DKLAVDGLLQHPDVKAVSFVGSTPIAEYIYATGAARKG 245 Query: 241 TPVTLEL----GGKSPQVVFEDADMEAMLPVVVNAIVQNAGQTCSAGSRLLVQRGAYEQV 296 L + G K+ VV DA++E + ++ A +AG+ C A S + +++ Sbjct: 246 GSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIADKL 305 Query: 297 LERLAGLFSQLKVGSS-QMDLDCGPLIRKTQQERVAGFLAEARRDGIPLVAQGE-IAAGV 354 + L LKV + + D + GP++ + ++ G++ + G L+ G + Sbjct: 306 VAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLKVAG 365 Query: 355 PANGFYQAPALLRDVPPRHRLAQEEVFGPVLAAMPFEDEAHAIALANGTDYGLVASVWTR 414 GF+ L V P + QEE+FGPVL + + A A+ L N ++G S++T Sbjct: 366 HDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSLFTS 425 Query: 415 DGGRQMRLARAIRSGQVFINNYGAGGGVELP-------FGGVKASGHGREKGF--EALYG 465 DG +R + G V IN V +P FGG K S G + E + Sbjct: 426 DGNTAREFSRRVEVGMVGIN-------VPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKF 478 Query: 466 FTVLKTIAIR 475 +T K+I R Sbjct: 479 YTRYKSIMQR 488 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 151 bits (382), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 145/474 (30%), Positives = 217/474 (45%), Gaps = 47/474 (9%) Query: 8 NRW---VAPASGQ----SIPVIDPSD-GQVFAAIARGNADDVERAVQAARLAYEGAWGKL 59 RW AP+ Q I V +P++ V + + +A +E A+Q A W Sbjct: 582 TRWQWRAAPSCTQVSSACIEVRNPANHADVVGTVQQADAAVLELALQHATSGI-NTWQAK 640 Query: 60 SAAERSRLLMKLAYKLQDHQEELAQLEGRDCGKPMKQARADAAAIVRYFEFYAGAADKLH 119 AER+ +L++ A Q H EL L R+ GK + A + + + +Y+ A Sbjct: 641 PIAERAAILLQAADLFQQHATELIALLVREAGKTLPNAIGELREAIDFLRYYSAQA---- 696 Query: 120 GHTIPYQAGYTVLTLREPHGVTAHIVPWNYPMQIFGRCVGGALAAGNTCVVKPAEDACLS 179 I A +P G+ A I PWN+P+ IF V ALAA N + KPAE L Sbjct: 697 ---IASDAN-------QPLGLVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPLI 746 Query: 180 ILRVAELAAEVGFPAGALNIVTGYGHEAGDLLVKHPDVDHVSFTGSPNVG-----KLVVR 234 R +L + G P AL + G G G LV P V V FTGS V KLV R Sbjct: 747 ACRAVQLLHQAGVPENALLFLPGSGETIGAQLVTDPRVSAVVFTGSTQVAQSIQRKLVQR 806 Query: 235 GAAE-HHTPVTLELGGKSPQVVFEDADMEAMLPVVVNAIVQNAGQTCSAGSRLLVQRGAY 293 +E P+ E GG++ +V A E ++ V+++ +AGQ CSA L +Q Sbjct: 807 SISEGKDIPLIAETGGQNTMIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQDDIA 866 Query: 294 EQVLERLAGLFSQLKVGS-SQMDLDCGPLIRKTQQERVAGFLAEARRDGIPLVAQGEIAA 352 EQ L+ L G +L++G + D GP+I Q + ++ +A+ A G+ Sbjct: 867 EQTLQMLHGAMQELRIGRPDHLATDVGPVIDAEAQAHLQAYIRQAQ-------AAGKQVR 919 Query: 353 GVP---ANGFYQAPALLRDVPPRHRLAQEEVFGPVLAAMPF--EDEAHAIALANGTDYGL 407 +P NG + AP ++ ++ + L Q EVFGPVL + + +D + N T +GL Sbjct: 920 QLPLPVTNGSFVAPCII-EIADINEL-QREVFGPVLHVLRYRRDDLPQLLMDINSTGFGL 977 Query: 408 VASVWTRDGGRQMRLARAIRSGQVFINN--YGAGGGVELPFGGVKASGHGREKG 459 + TR + R + G +++N GA GV+ PFGG SG G + G Sbjct: 978 TLGIHTRIDETIDYVVRHAQVGNIYVNRNIVGAVVGVQ-PFGGEGLSGTGPKAG 1030 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,234,228 Number of extensions: 56280 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 3 Length of query: 477 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 390 Effective length of database: 899,382 Effective search space: 350758980 Effective search space used: 350758980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)