BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2105.p (252 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 142 2e-35 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 120 8e-29 gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxo... 117 8e-28 gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family ... 117 9e-28 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 116 1e-27 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 142 bits (359), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 132/243 (54%), Gaps = 2/243 (0%) Query: 9 IVTGGGSGFGEGIAKAYAREGAAVVVADIGQTGGLRVVEEIQAGGGKAIFAKADVSKRAD 68 ++TG +G G A A+AREG V V+ + G + E++A G +A F ADV AD Sbjct: 36 LITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLLADVRFEAD 95 Query: 69 MDQLLATALEHFGKLDIVVNNAGTTHRNRPMLEVEEEEFDRVYAVNVKSIFLSAKTFVPY 128 + L+ + FG++D+ VNNAGT + P++E + + VNV LS K + Sbjct: 96 VRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHEMRV 155 Query: 129 FRQVGGGTFVNIASTAGIRPRPGLTWYNGSKGAVITTSKSMAAELGPDKIRVNCVNPVIS 188 G G+ +N++S AG G + Y SK AV +KS A E +RVN V P Sbjct: 156 MLAQGSGSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAPGPV 215 Query: 189 ATGLLAEFMGVPDTPENRKKFVATIPMGRFSTPEDIANACLYLGSDEAQFVTGVCIEVDG 248 AT +L F+G + EN+ F+ATIP GR +TP++IA ++L SD+ ++TG I VDG Sbjct: 216 ATEMLDRFVG--GSEENKAGFLATIPAGRAATPDEIAQTIVFLASDKVSYLTGQSIAVDG 273 Query: 249 GRC 251 G Sbjct: 274 GHT 276 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 120 bits (301), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 130/250 (52%), Gaps = 11/250 (4%) Query: 2 RLQDKVAIVTGGGSGFGEGIAKAYAREGAAVVVADIGQTGGLRVV-EEIQAGGGKAIFAK 60 +L KVA V GG G G I K AR+GAAV + + V +EI+A GG+A+ Sbjct: 6 QLTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAGGRALAIH 65 Query: 61 ADVSKRADMDQLLATALEHFGKLDIVVNNAGTTHRNRPMLEVEEEEFDRVYAVNVKSIFL 120 AD S + + Q + A + FG++DI+VNNAG P+ + + E+FDR AVNV+S+F+ Sbjct: 66 ADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLAL-APVEDFKLEDFDRTVAVNVRSVFV 124 Query: 121 SAKTFVPYFRQVGGGTFVNIASTAGIR-PRPGLTWYNGSKGAVITTSKSMAAELGPDKIR 179 + + + + GG + I ST R P G Y SK A++ +K +A +LGP I Sbjct: 125 ATQEAARHMGE--GGRIITIGSTNADRMPFAGGAVYAMSKAAIVGLTKGLARDLGPRGIT 182 Query: 180 VNCVNPVISATGLLAEFMGVPDTPENRKKFVATIPMGRFSTPEDIANACLYLGSDEAQFV 239 VN V P T + P + + +GR+ E+IA+ YL EA ++ Sbjct: 183 VNNVQPGPVDTDM------NPANSDFADTLKGLMAIGRYGKDEEIASFVAYLAGPEAGYI 236 Query: 240 TGVCIEVDGG 249 TG + +DGG Sbjct: 237 TGASLTIDGG 246 >gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 254 Score = 117 bits (292), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 122/250 (48%), Gaps = 8/250 (3%) Query: 3 LQDKVAIVTGGGSGFGEGIAKAYAREGAAVVVADIGQTGGLRVVEEIQAGGGKAIFAKAD 62 KVAIVTGG SG G+ +AK GA+VV+ + EI GGK ++ D Sbjct: 4 FSSKVAIVTGGSSGIGKEVAKRLVAAGASVVIGGRDEAKLANAAREI---GGKVLYVAGD 60 Query: 63 VSKRADMDQLLATALEHFGKLDIVVNNAGTTHRNRPMLEVEEEEFDRVYAVNVKSIFLSA 122 ++ + L+A A + FG +DI++NNAG + + LEV+E+E+ +K F A Sbjct: 61 IALPSTAKALVAAATDAFGGVDILINNAGV-FKPKAFLEVDEQEYSWFLDTILKGKFFMA 119 Query: 123 KTFVPYFRQVGGGTFVNIASTAGIRP---RPGLTWYNGSKGAVITTSKSMAAELGPDKIR 179 + + GGG V S I+ P Y+ + V ++++A EL P IR Sbjct: 120 QAAAKAMQLRGGGAIVQTGSLWAIQAIGATPSAA-YSAANAGVHALTRNLAIELAPFNIR 178 Query: 180 VNCVNPVISATGLLAEFMGVPDTPENRKKFVATIPMGRFSTPEDIANACLYLGSDEAQFV 239 +N V P + T + FM + F A P+GR P D+A A L+L S A ++ Sbjct: 179 INTVAPAVVETPVYNTFMTDDQVKDTLPSFNAFHPLGRNGQPADVAEAMLFLASSSASWI 238 Query: 240 TGVCIEVDGG 249 TG + VDGG Sbjct: 239 TGTVLPVDGG 248 >gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family protein [Janthinobacterium sp. Marseille] Length = 248 Score = 117 bits (292), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 129/250 (51%), Gaps = 13/250 (5%) Query: 3 LQDKVAIVTGGGSGFGEGIAKAYAREGAAVVVADIGQTGGLRVVEEIQAGGGKAIFAKAD 62 L++K I+TG G G GA +V+AD+ + + QA G +AI K D Sbjct: 5 LRNKTIIITGAGGNIGHAYCDGLVAAGANIVMADLQD-----LSAQAQAYGQQAIAMKID 59 Query: 63 VSKRADMDQLLATALEHFGKLDIVVNNAGTTHRNR--PMLEVEEEEFDRVYAVNVKSIFL 120 VS A ++ + HFG++D ++NNAG +++ +E+DR Y +NV+ ++L Sbjct: 60 VSDPASIEMMAKQTHAHFGRIDGIINNAGFFKGCSFGSFMDIPIDEWDRCYEINVRGVWL 119 Query: 121 SAKTFVPYFRQVGGGTFVNIASTAGIRPRPGLTWYNGSKGAVITTSKSMAAELGPDKIRV 180 + PY R+ G G +N++S + P Y SK A+I ++S+A E+G I+ Sbjct: 120 CCRAVFPYMREQGSGKIINVSSNTPYKGVPNFLHYVSSKAAIIGLTRSLAREVGAHNIQA 179 Query: 181 NCVNP-VISATGLLAEFMGVPDTPENRKKFVATIPMGRFSTPEDIANACLYLGSDEAQFV 239 N + P +I +LA+ V D ++ +A + R TP D+ A L+L SD + F+ Sbjct: 180 NTLCPDLIPDADILAKQGSVAD-----ERTIAGRCLQRSQTPHDMVGAALFLLSDGSDFI 234 Query: 240 TGVCIEVDGG 249 TG + V+GG Sbjct: 235 TGQSLLVNGG 244 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 116 bits (290), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 120/247 (48%), Gaps = 9/247 (3%) Query: 3 LQDKVAIVTGGGSGFGEGIAKAYAREGAAVVVADIGQTGGLRVVEEIQAGGGKAIFAKAD 62 L +VA+VTG G G IA+ A+ GA V+ ++G + E + GG + D Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVL---D 62 Query: 63 VSKRADMDQLLATALEHFGKLDIVVNNAGTTHRNRPMLEVEEEEFDRVYAVNVKSIFLSA 122 V+ A L+ + FG + I+VNNAG T M +++EE+D V A N+ ++ + Sbjct: 63 VNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAM-RMKDEEWDSVIATNLTAVGRLS 121 Query: 123 KTFVPYFRQVGGGTFVNIASTAGIRPRPGLTWYNGSKGAVITTSKSMAAELGPDKIRVNC 182 + + + G +NI S G G Y +K V S+++A E+G I VNC Sbjct: 122 RAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 183 VNPVISATGLLAEFMGVPDTPENRKKFVATIPMGRFSTPEDIANACLYLGSDEAQFVTGV 242 + P G + M + + + +P+GR PEDIA A +L S +A ++TG Sbjct: 182 IAP-----GFIDTDMTKTLSEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGT 236 Query: 243 CIEVDGG 249 + V+GG Sbjct: 237 TLHVNGG 243 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 621,232 Number of extensions: 26875 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 23 Length of query: 252 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 171 Effective length of database: 921,564 Effective search space: 157587444 Effective search space used: 157587444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)