BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2104.p
         (435 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980910|ref|YP_001353544.1| major facilitator transporter [...   546   e-157

>gi|152980910|ref|YP_001353544.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 436

 Score =  546 bits (1407), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 271/427 (63%), Positives = 341/427 (79%), Gaps = 3/427 (0%)

Query: 11  SARASFEDATYSKVTWRLLPLLFLCYVASYLDRVNVGFAKLQMLQDLKFSDTVYGLGAGI 70
           S R   ED+ Y+KVT RLLP LFLCYVA+YLDRVNVGFAKL ML DL+FS+T+YGLGAGI
Sbjct: 11  SDRTKLEDSIYAKVTLRLLPFLFLCYVAAYLDRVNVGFAKLSMLNDLQFSETIYGLGAGI 70

Query: 71  FFLGYFVFEVPSNMILHKVGARLWIARIMITWGIISGAMAYVTTPEMFYIMRFLLGVAEA 130
           FF+GYF+FEVPSN+I+HKVGAR WIARIMITW I+S A  +VTTP MFY++RFLLGVAEA
Sbjct: 71  FFIGYFLFEVPSNIIMHKVGARRWIARIMITWSILSAATMFVTTPTMFYVIRFLLGVAEA 130

Query: 131 GFFPGVILYLTYWYPAARRGKITALFMTGIALSGVIGGPFSGWIMHAMPGVWGHTGWQWM 190
           GFFPG++LYLTYW+P +RRG++ ALFM GI ++GV+GGP SGWIM+A  G+ G  GWQW+
Sbjct: 131 GFFPGIVLYLTYWFPTSRRGRMNALFMIGIPIAGVVGGPLSGWIMNAFAGMNGWHGWQWL 190

Query: 191 FILEAIPSLVLGVLVILYMKDRIRDAEWLSEDEKRLLEANISHEES--QKEHLSLGAMFA 248
           F+LEA+PSL LG++ + Y+ + IR + WLSE+EK +LEANI+ + S   K H S+  +F 
Sbjct: 191 FLLEALPSLALGIMTLFYLPNSIRASSWLSENEKAILEANIAKDNSVGDKSH-SVAGVFT 249

Query: 249 NGRVWLGALIYFCFVMGLYGVSFWLPTIIKATGVSDPLNVGLLTAIPYAFAAAAMVLIGR 308
           N +VWL A IYFC +MGLYG+SF+LPT++KA+GV D L+VGLLTAIPY     A +L+ R
Sbjct: 250 NPKVWLMAAIYFCCMMGLYGISFYLPTLVKASGVKDALDVGLLTAIPYTCGVIATLLVAR 309

Query: 309 SADARRERRWHVAIPAFIGCIGLLLSTLYGHNTALAMASLTLASVGIMTTLPLFWSLPTA 368
           SAD  RERRWH AI + +G +GL LST+YG N  LA+ +L+L + G+++T+P+FW+ P+A
Sbjct: 310 SADRMRERRWHFAIASALGGLGLFLSTVYGDNVVLALMALSLGTAGMLSTMPVFWTYPSA 369

Query: 369 FLSGTAAAAGIALINSLGNLAGFVSPFLVGWLKDTTQSTNAGMYVLAASLVIGGLLTLTL 428
            L G AAAAGI LINS+GNLAGFVSP +VGWLKD T STNAGMY +A +LV+G  L L  
Sbjct: 370 ILGGAAAAAGIGLINSVGNLAGFVSPTIVGWLKDVTGSTNAGMYFVAGALVLGACLALLQ 429

Query: 429 PARLVNK 435
           P  LVNK
Sbjct: 430 PRSLVNK 436


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,037,709
Number of extensions: 45519
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 3
Length of query: 435
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 349
Effective length of database: 903,079
Effective search space: 315174571
Effective search space used: 315174571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)