BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2100.p (238 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 282 1e-77 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 182 1e-47 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 172 2e-44 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 170 6e-44 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 167 7e-43 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 282 bits (721), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 139/234 (59%), Positives = 181/234 (77%), Gaps = 4/234 (1%) Query: 5 DSLLRVDRLHAWYGQSHVLHGVSLEVQRGEIVSILGRNGAGRSTLLKALMGLVRSRGGID 64 +LL + LHA+YG+SHVLHG+ + +Q GEIVS+LGRNGAGRST +KA MG+V + G I Sbjct: 2 SALLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAATGTIR 61 Query: 65 FDGDDIAGLPTHVIARRGIGYVPESRDVFPTLTVAQNLLLGRRSGRAPVHGWREEEVYAL 124 F G +I GLPT+ IAR+G+GYV ESR++FPTL+VAQNL+LG ++ W +++Y L Sbjct: 62 FKGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQAKSR----WSADDMYRL 117 Query: 125 FPALARRHKVAAGALSGGEQQMLALGRALLGNPSLLLIDEPTEGLSPQMVEQVAHYLELL 184 FP L R V AG LSGGEQQMLAL R L+G+P L++IDEPTEGL+PQMV VA++L+ L Sbjct: 118 FPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQEL 177 Query: 185 RQRNVAVLLIEQKQAIALELSQRAYVMGRGEMVFHGTPAALQADQDLQREWLAL 238 QR V+VLLIEQK AIAL++SQR YVMG G++VF G+P LQAD +++EWL + Sbjct: 178 VQRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLGV 231 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 182 bits (462), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 147/234 (62%), Gaps = 4/234 (1%) Query: 7 LLRVDRLHAWYGQSHVLHGVSLEVQRGEIVSILGRNGAGRSTLLKALMGLVR-SRGGIDF 65 +L+V++L+ +YG +H L G+SL V++G+ +S+LGRNG G++TLLK LMG++ + G + Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 66 DGDDIAGLPTHVIARRGIGYVPESRDVFPTLTVAQNLLLGRRSGRAPVHGWREEEVYALF 125 DG DI L H A GI YVP+ R++F LTV +NLL+G + + EVY LF Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASVIKGEVYELF 120 Query: 126 PALARRHKVAAGALSGGEQQMLALGRALLGNPSLLLIDEPTEGLSPQMVEQVAHYLELLR 185 P L G LSGG+QQ LA+ RALL P L+++DEPTEG+ P +++ + + LLR Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 186 QR-NVAVLLIEQKQAIALELSQRAYVMGRGEMVFHGTPAALQADQDLQREWLAL 238 +R ++ +LL EQ A EL+ V+ RGE+V G+ + D D ++ LA+ Sbjct: 181 ERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEM--DDDNVKKHLAV 232 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 172 bits (436), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 143/242 (59%), Gaps = 14/242 (5%) Query: 4 SDSLLRVDRLHAWYGQSHVLHGVSLEVQRGEIVSILGRNGAGRSTLLKALMGL---VRSR 60 +D++L++ L YG + GV LEV +GE+++++G NGAG++T LKA+ G R Sbjct: 2 TDTVLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRVE 61 Query: 61 GGIDFDGDDIAGLPTHVIARRGIGYVPESRDVFPTLTVAQNLLLG------RRSGRAPVH 114 G I++ G I GL + + R+ + VPE R VF +++ +NLL+G + A + Sbjct: 62 GHIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADID 121 Query: 115 GWREEEVYALFPALARRHKVAAGALSGGEQQMLALGRALLGNPSLLLIDEPTEGLSPQMV 174 W + +FP L R AG LSGGEQQMLA+ RAL+ +P LLL+DEP+ GLSP MV Sbjct: 122 KW-----FGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMV 176 Query: 175 EQVAHYLELLRQRNVAVLLIEQKQAIALELSQRAYVMGRGEMVFHGTPAALQADQDLQRE 234 E++ + + + + +LL+EQ +AL+ + RAYVM G + HG + +D ++ Sbjct: 177 EKIFEVIRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREA 236 Query: 235 WL 236 +L Sbjct: 237 YL 238 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 170 bits (431), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 146/239 (61%), Gaps = 4/239 (1%) Query: 1 MDKSDSLLRVDRLHAWYGQSHVLHGVSLEVQRGEIVSILGRNGAGRSTLLKALMGLVR-S 59 +D+ ++L+++ + YG + ++ +SLEV GEIV+++G NGAG+ST L+A+ GL + Sbjct: 10 LDRGSNMLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLA 69 Query: 60 RGGIDFDGDDIAGLPTHVIARRGIGYVPESRDVFPTLTVAQNLLLG--RRSGRAPVHGWR 117 G I +G ++G + GI + PE R VFP LTV +N+ +G RR +A V Sbjct: 70 HGSIRMNGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDM 129 Query: 118 EEEVYALFPALARRHKVAAGALSGGEQQMLALGRALLGNPSLLLIDEPTEGLSPQMVEQV 177 E ++ FP L R + AG LSGGEQQMLA+ RAL+ P L++ DEP+ GL+P +VEQ+ Sbjct: 130 ER-MFDKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQI 188 Query: 178 AHYLELLRQRNVAVLLIEQKQAIALELSQRAYVMGRGEMVFHGTPAALQADQDLQREWL 236 + +R VL++EQ AL + R Y++ G +V G+ A ++A+ +++R +L Sbjct: 189 FSLIREIRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYL 247 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 167 bits (422), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 138/233 (59%), Gaps = 2/233 (0%) Query: 6 SLLRVDRLHAWYGQSHVLHGVSLEVQRGEIVSILGRNGAGRSTLLKALMGLVRSRGG-ID 64 S L V L Y + +VLH VS+EV G+I ILG NGAG+STL+++++GL R G I Sbjct: 2 SNLIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEIL 61 Query: 65 FDGDDIAGLPTHVIARRGIGYVPESRDVFPTLTVAQNLLLGRR-SGRAPVHGWREEEVYA 123 + G ++AG TH I GI +PE R VFP +TVA+NL LG + V R VY Sbjct: 62 WGGKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVVRDRLARVYE 121 Query: 124 LFPALARRHKVAAGALSGGEQQMLALGRALLGNPSLLLIDEPTEGLSPQMVEQVAHYLEL 183 +FP L R AG +SGGEQ M+++GR L+ P LL+IDEP+ GLSP V++ ++ Sbjct: 122 IFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIKQ 181 Query: 184 LRQRNVAVLLIEQKQAIALELSQRAYVMGRGEMVFHGTPAALQADQDLQREWL 236 + + VLL+EQ L +S YV+ +G ++ GT AL ++ D++ + Sbjct: 182 INALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYF 234 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 539,038 Number of extensions: 21013 Number of successful extensions: 249 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 58 Length of query: 238 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 158 Effective length of database: 925,261 Effective search space: 146191238 Effective search space used: 146191238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)