BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2099.p (252 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 306 6e-85 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 173 1e-44 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 159 1e-40 gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC t... 126 1e-30 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 120 7e-29 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 306 bits (785), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 148/241 (61%), Positives = 184/241 (76%) Query: 6 ALELHGLHKAFERSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADAGRVLL 65 ALEL + K F ++I+CG LQL G+R ALIGPNGAGKS+LFNL+SGR+ +G +LL Sbjct: 5 ALELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILL 64 Query: 66 HGRDITRDSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRISQLRD 125 +G I P QINR GL+RSFQIT++F RLS FEN+RCA+LW+LGYRY+FW+R++ L+D Sbjct: 65 NGSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLNGLQD 124 Query: 126 ANARAHAVLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAES 185 N RA V++++GL R V A LSYAEQRALE+ +TIA A V+LLDEPTAGMSR+ES Sbjct: 125 VNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAGMSRSES 184 Query: 186 AAMVALIREVTVGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQRIRANPQVQALY 245 A V LIR+++ GKTLLMVEHDM VVF LADRIAV+ G +IACD+ IR NP VQ Y Sbjct: 185 DAAVELIRKISAGKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNIRNNPLVQQAY 244 Query: 246 L 246 L Sbjct: 245 L 245 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 173 bits (438), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 150/254 (59%), Gaps = 12/254 (4%) Query: 2 STAYALELHGLHKAFERSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADAG 61 +T ALEL G+ + + AG+ +LIGPNGAGK++ +N++SG + +G Sbjct: 5 NTTAALELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSG 64 Query: 62 RVLLHGRDITRDSPQQINRLGLARSFQITSLFPRLSAFENV--------RCALLWTLGYR 113 RV L G DIT +P+QI++LGL RSFQ TS+F + EN+ +C +L L Sbjct: 65 RVKLFGHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRT 124 Query: 114 YAFWRRISQLRDANARAHAVLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVILL 173 F R + LR +A+ +L +GL+ARA A LSY EQR L + + +AA V+LL Sbjct: 125 QKFRREEADLR---TQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLL 181 Query: 174 DEPTAGMSRAESAAMVALIREV-TVGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDSA 232 DEP AG++ +E+ A ++R + G T+L+VEHDM +V ++D I V++ GR+IA S Sbjct: 182 DEPAAGLNPSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSP 241 Query: 233 QRIRANPQVQALYL 246 I+ +P+V YL Sbjct: 242 SEIQNDPEVIRAYL 255 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/255 (36%), Positives = 145/255 (56%), Gaps = 12/255 (4%) Query: 1 MSTAYALELHGLHKAFERSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADA 60 MS L + G+ K F Q L V++++ G+ LIGPNGAGK++ FN+++G Y+AD Sbjct: 1 MSEQIILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADT 60 Query: 61 GRVLLHGRDITRDSPQQINRLGLARSFQITSLFPRLSAFENVRC--------ALLWTLGY 112 G L G+ + +P ++ + G+AR+FQ LF ++A ENV L + + Sbjct: 61 GSFELAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFH 120 Query: 113 RYAFWRRISQLRDANARAHAVLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVIL 172 A R +++R RA +L+ VG+A AE A LSY +QR LE+A +A D ++ Sbjct: 121 HKAARREEAEIRQ---RAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLA 177 Query: 173 LDEPTAGMSRAESAAMVALIREVTV-GKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDS 231 LDEP AGM+ E + L+ ++ GKT+L++EHD++++ L DRI V+D G+ IA Sbjct: 178 LDEPAAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGV 237 Query: 232 AQRIRANPQVQALYL 246 ++ +P V YL Sbjct: 238 PADVQKDPAVIEAYL 252 >gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC transporter, ATP-binding protein [Janthinobacterium sp. Marseille] Length = 288 Score = 126 bits (317), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 142/253 (56%), Gaps = 7/253 (2%) Query: 1 MSTAYA--LELHGLHKAFERSQILCGVDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRA 58 + TA+ L L + +F+ + + ++L + GE +IGPNGAGK+++ ++++G+ R Sbjct: 38 LDTAHGVILYLEDITVSFDGFKAINKLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRP 97 Query: 59 DAGRVLL-HGRDITRDSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFW 117 +G D+T+ + +I G+ R FQ ++F + + FEN+ A+ + + Sbjct: 98 TSGTAFFGQSIDLTKLTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLF 157 Query: 118 RRISQLRDANARAHAVLDKVGLAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPT 177 R++ + + +L + L + AG LS+ +++ LE+ + + + +ILLDEP Sbjct: 158 ARLNS--EQIGKIEEILKLIRLNGQEHRIAGLLSHGQKQWLEIGMLLMQEPQLILLDEPV 215 Query: 178 AGMSRAESAAMVALIREVTVGKTLLMVEHDMQVVFDLA--DRIAVMDNGRVIACDSAQRI 235 AGMS AE+A L+ E+ ++++VEHDM V ++A D++ V+ G V+A S Q++ Sbjct: 216 AGMSDAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGDKVTVLHEGSVLAEGSMQQV 275 Query: 236 RANPQVQALYLDR 248 +A+ +V +YL R Sbjct: 276 QADERVIEVYLGR 288 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 120 bits (301), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 133/236 (56%), Gaps = 18/236 (7%) Query: 25 VDLQLQAGERCALIGPNGAGKSSLFNLVSGRYRADAGRVLLHGRDITRDSPQQINRLGLA 84 +++Q+ GE L+GPNG+GK++ FN+++G Y+A +G ++ G+++ +PQ+I R G+A Sbjct: 39 LNMQINEGEVLGLLGPNGSGKTTFFNVLTGLYKATSGSIIYKGQEVIGQTPQEIYRSGVA 98 Query: 85 RSFQITSLFPRLSAFENV--------RCALLWTLGYRYAFWRRISQLRDANARAHAVLDK 136 R+FQ + L L+ F+N+ L + L R AF ++ + A+L+ Sbjct: 99 RTFQRSRLSLPLTVFDNIVIGDYQHMNHGLFFNLFQRKAFR---AEYDAYVGKVEALLNI 155 Query: 137 VG--LAARAEVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSRAESAAMVALIRE 194 L AR G + ++R +E+ + + ++LLDEP+AGM+ E+ A++ I + Sbjct: 156 FSPPLVARMFEPVGTFTMIDRRRIEVCRALLSQPRLLLLDEPSAGMTHDETEALMDDILQ 215 Query: 195 VTVGK----TLLMVEHDMQVVFDLADRIAVMDNGRVIACDSAQRIRANPQVQALYL 246 V GK T++++EH+M V+ + DR V + G+ IA + I A+P VQ YL Sbjct: 216 VR-GKLENLTIVLIEHEMNVIERITDRCIVFNYGKKIAEGTYAEITADPNVQTAYL 270 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 539,443 Number of extensions: 20959 Number of successful extensions: 301 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 57 Length of query: 252 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 171 Effective length of database: 921,564 Effective search space: 157587444 Effective search space used: 157587444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)