BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2098.p (407 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino a... 418 e-118 gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino a... 101 1e-22 gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino a... 78 1e-15 gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 68 1e-12 gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino a... 60 2e-10 >gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino acid transport system permease component [Janthinobacterium sp. Marseille] Length = 424 Score = 418 bits (1075), Expect = e-118, Method: Compositional matrix adjust. Identities = 240/397 (60%), Positives = 292/397 (73%), Gaps = 11/397 (2%) Query: 8 WLI---FALLLLAAPLVWPQSAALSLLSQMGTMVLLCLSCNMLLGEGGMLSFGHAVYSGL 64 WLI F LL+ APL++ QSA+LSLL QMGT ++ LS NMLLG+GGMLSFGHAVYSGL Sbjct: 12 WLIWGGFTALLVVAPLIFTQSASLSLLCQMGTFIIFALSYNMLLGQGGMLSFGHAVYSGL 71 Query: 65 GAFGAIHLMNRMAAGALVFPVTLVPLAAGLTGALCALVLGYPTTRRAGTTFAMITLGLVE 124 GAF AIH +N +AAG L P+TL+PL G+ G + GY TTR++GTTFAMITLG+VE Sbjct: 72 GAFCAIHAINLVAAGNLHIPITLIPLVGGVAGLFFGALFGYVTTRKSGTTFAMITLGIVE 131 Query: 125 LVSACVLMLPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLISGWLLVCTMAIYALRQ 184 LV AC LM P FGGEGGI +RV+GE GI+YGPQIQVYYLI+GWLL+ T+A+YA Q Sbjct: 132 LVFACSLMFPGFFGGEGGIFTDRVVGEAFFGITYGPQIQVYYLIAGWLLLSTVAMYAFTQ 191 Query: 185 TPLGRMLNAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVAGGLSAINFEIVSAEYVGA 244 TPLGR++NAVRDNPERA F+GYDPQ VRYL L+LSAFFAG++G L+AINFEIVSAE V A Sbjct: 192 TPLGRIINAVRDNPERAEFVGYDPQWVRYLTLMLSAFFAGISGALTAINFEIVSAENVSA 251 Query: 245 LRSGTILLFTFIGGTAYFYGPIVGGVVGVLFSSWLSAYTQAWQFYLGAFFILIVMTAPGG 304 LRSG ILLFTFIGGTA+F+GPI+G +VGV + LS YT AWQ YLG FF+LIVM APGG Sbjct: 252 LRSGMILLFTFIGGTAFFFGPILGAIVGVFLTVVLSNYTNAWQLYLGVFFVLIVMLAPGG 311 Query: 305 LASLIDRGWRTLRSGRLEARMMARLAAWLLAALVTLAGVVLATEMAYQTSLGSLSDTAEG 364 +A L+ + R L+ G+L+ A L A L+ L +VL EM Y SL A Sbjct: 312 IAGLLMQFMRLLQYGKLQQMAAHLALALLAALLMGLGFIVL-VEMLYHLSL-----NARN 365 Query: 365 AAPLVWWGWSIDVHSLLPWLVALLLAAAGTVGLVFWR 401 + L+ +GW++D WL+A L AGT GL++WR Sbjct: 366 GSTLLLFGWTLDTAQAQGWLLA--LCVAGTGGLIWWR 400 >gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 343 Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 150/309 (48%), Gaps = 23/309 (7%) Query: 14 LLLAAPLVWPQSAALSLLSQMGTMVLLCLSCNMLLGEGGMLSFGHAVYSGLGAFGAIHLM 73 LL APL Q ++LL ++ L N+L G GG+LSFGHA++ +GA+ A ++ Sbjct: 39 LLAIAPLFVSQYY-MTLLIPFFAYAVILLGFNLLFGYGGLLSFGHALFIAIGAYAAAAMV 97 Query: 74 NRMAAGALVFPVTLVPLAAGLTGALCALVLGYP----TTRRAGTTFAMITLGLVELVSAC 129 + G + F + L LT + + ++ P +R G F M+TL L + Sbjct: 98 AK--TGMISFEMML------LTAVVASFIISIPIAWLASRFTGIFFGMLTLSFGMLFHS- 148 Query: 130 VLMLPEVFGGEGGISGNRVIGEPVLGISYGPQIQV-------YYLISGWLLVCTMAIYAL 182 L + + GG SG RV + G+ + YY +L+ T ++ + Sbjct: 149 --FLNKFYYITGGDSGMRVPRPSLFGMELDQFDKTAFLGGPFYYYCLVMVLLLTWVMWRI 206 Query: 183 RQTPLGRMLNAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVAGGLSAINFEIVSAEYV 242 ++P G L A RDN +A ++G + VR +A ++SA +A + G + +N + E Sbjct: 207 VRSPYGIHLMASRDNAIKALYLGVKIRSVRAIAFVVSAVYASIGGVILGVNTGLADPELA 266 Query: 243 GALRSGTILLFTFIGGTAYFYGPIVGGVVGVLFSSWLSAYTQAWQFYLGAFFILIVMTAP 302 SG ++ +GG F GP++G V +L LS+ TQ W+F+LGA ++V+ P Sbjct: 267 YWTHSGHLVFMAVLGGYQEFLGPVLGAFVFILLQDELSSLTQYWRFFLGAILAILVVVLP 326 Query: 303 GGLASLIDR 311 GG+ I + Sbjct: 327 GGIMGAIRK 335 >gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/317 (24%), Positives = 127/317 (40%), Gaps = 32/317 (10%) Query: 24 QSAALSLLSQMGTMVLLCLSCNMLLGEGGMLSFGHAVYSGLGAFGAIHLMNRMAAGALVF 83 S ++L+ + + L+ +++ G G+LS GH V+ LG + + R V+ Sbjct: 44 SSYTIALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRSIGRDGVY 103 Query: 84 PVTLVPLAAGLT------------------------GALCALVLGYPT--TRRAGTTFAM 117 L L L A + GY +R G F++ Sbjct: 104 QSNLPDFMVFLNWKEYPWYWWMTEHFWFAMLLVVLVPGLLAFIFGYFAFRSRIKGVYFSI 163 Query: 118 ITLGLVELVSACVLMLPEVFGGEGGISG-NRVIGEPVLGISYGPQIQVYYLIS-GWLLVC 175 IT + FGG G + R++G I+ V YL++ +LL Sbjct: 164 ITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILG---FTITDPSTKAVLYLVTLAFLLAA 220 Query: 176 TMAIYALRQTPLGRMLNAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVAGGLSAINFE 235 A+ + LGR+L VRD+ R FIGY+P + LSA G+AG L Sbjct: 221 LFVCRAIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVVCGIAGALYVPQVG 280 Query: 236 IVSAEYVGALRSGTILLFTFIGGTAYFYGPIVGGVVGVLFSSWLS-AYTQAWQFYLGAFF 294 I++ + S ++++ +GG GPI+G SW + A+ W + LG F Sbjct: 281 IINPSEMSPANSIEMVIWAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIF 340 Query: 295 ILIVMTAPGGLASLIDR 311 I + + P G+ L+ + Sbjct: 341 IFVTLFMPQGILGLVKK 357 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 38/313 (12%) Query: 19 PLVWPQSAALSLLSQMGTMVLLCLSCNMLLGEGGMLSFGHAVYSGLGAFGAIHLMNRMAA 78 PL+WP LS+++ +G V+ +S N+LLG G LS GH + GLGA+ L Sbjct: 18 PLIWPDPYLLSVVASVGIFVIAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLL------ 71 Query: 79 GALVFPVTL---------------VPLAAGLT-GALCALVLGYPTTRRAGTTFAMITLGL 122 +L F VTL V A G+ A+ +LG R G F ++T+ Sbjct: 72 -SLGFDVTLWGMTEPLVVTAKPVWVSFACGIAFAAIAGWLLGKLAFRVRGAYFVIVTISF 130 Query: 123 VELVSACVLMLPEVFGGEGGISGNR-------VIGEPVLGISYGPQIQVYYLISGWLLVC 175 +++ L ++ EG ++ N V GE V I ++ Y+L+ +V Sbjct: 131 AQVMRMVSLNWVDL--TEGPMALNNIPALTMWVPGEGV--IDLASKLSTYWLVLAVAVVS 186 Query: 176 TMAIYALRQTPLGRMLNAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVAGGLSAINFE 235 + + A+ + +GR + A+R+N A +G +A I +A AG AGGL A Sbjct: 187 YLLVAAIVHSRIGRAMIALRENETLARSVGIRVTHYLGIATIFAAGIAGAAGGLYAHTVR 246 Query: 236 IVSAEYVGALRSGTILLFTFIGGTAYFYGPIVGGVVGVLFSSWLSAYTQ---AWQFYLGA 292 I+ + + + +++ +GG GP+VGG++ L L W Y G Sbjct: 247 IIDPDVFMFMFTIMMVIMVIVGGKGTLAGPVVGGLLFGLLPEVLRGVVSPEIQWMIY-GV 305 Query: 293 FFILIVMTAPGGL 305 I +++ P G+ Sbjct: 306 LMIAVLVFMPKGV 318 >gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 61/287 (21%) Query: 38 VLLCLSCNMLLGEGGMLSFGHAVYSGLGAFGAIHLMNRMAAGALV-----FPV------- 85 ++L L N+++G G+L G+ + +GA+ L + A L +P Sbjct: 50 IMLALGLNVVVGFAGLLDLGYIAFYAIGAYLTALLASPQFAVVLESFVNQYPAIGETLLW 109 Query: 86 ----------------TLVPLAAGLTGALCALVLGYPTTRRAGTTFAMITLGLVELVSAC 129 +VPLAA + G AL LG PT + G A++TLG E++ Sbjct: 110 VFGPEIAQNGIHLSLWAIVPLAALVAGFFGAL-LGAPTLKLRGDYLAIVTLGFGEIIRIF 168 Query: 130 VLML---------PE---------VFG----GEGGISGNRVIGEPVLGISYGPQIQVYYL 167 + L P+ +FG GE G +IG+ + P + YY Sbjct: 169 MNNLNGPVNITNGPQGINMIDPIRIFGVSLNGEAGSRATVMIGDYAM-----PSVNAYYF 223 Query: 168 ISGWLLVCTMAIY---ALRQTPLGRMLNAVRDNPERAAFIGYDPQRVRYLALILSAFFAG 224 + +L +C I+ L+ + LGR A+R++ A +G + + V+ LA + A F G Sbjct: 224 L--FLFLCIAIIFISVRLQNSRLGRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFGG 281 Query: 225 VAGGLSAINFEIVSAEYVGALRSGTILLFTFIGGTAYFYGPIVGGVV 271 +AG + A VS E S +L +GG + G ++GG++ Sbjct: 282 IAGAMFASFQGFVSPESFSLTESIAVLAMVVLGGMGHIPGVVLGGII 328 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 818,376 Number of extensions: 33028 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 7 Length of query: 407 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 322 Effective length of database: 906,776 Effective search space: 291981872 Effective search space used: 291981872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)