BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2096.p
         (499 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980384|ref|YP_001353238.1| hypothetical protein mma_1548 [...   683   0.0  

>gi|152980384|ref|YP_001353238.1| hypothetical protein mma_1548
           [Janthinobacterium sp. Marseille]
          Length = 559

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/485 (67%), Positives = 391/485 (80%), Gaps = 2/485 (0%)

Query: 17  PFGNRFADLPPAFYTRLQPTPLPAPYLVGFSDAAAASVGLARPAEEDRSFLDIFAGNQIA 76
           P  N FA LPPA YT L PTPLP PYLV  S + AA +GL         F++ F GN++ 
Sbjct: 75  PLENSFATLPPAHYTALMPTPLPDPYLVCASASTAAMIGLDFAETGGTEFIETFTGNRLL 134

Query: 77  PGSMPLSAVYSGHQFGVWAGQLGDGRAITLGDLAATDGQ--GRIELQLKGAGLTPYSRMG 134
             S PLSAVYSGHQFGVWA QLGDGRAI LGD+ A + +  GR+ELQLKGAGLTPYSRMG
Sbjct: 135 LNSKPLSAVYSGHQFGVWASQLGDGRAILLGDVPAPEIEPSGRLELQLKGAGLTPYSRMG 194

Query: 135 DGRAVLRSSIREFLCSEAMAALGIPTTRALTVIGSDQRVLRESAETAAVVTRMAPSFIRF 194
           DGRAVLRSSIREFLCSEAMAALG+PTTRAL V GSDQ V+RE AETAAV TR+A SF+RF
Sbjct: 195 DGRAVLRSSIREFLCSEAMAALGVPTTRALCVTGSDQLVMREQAETAAVATRVAQSFVRF 254

Query: 195 GSFEHWYYNQRFDELKVLGDTVLEQFYPALLQEDNPYQALLQEVTRRTATLMAQWQAVGF 254
           GSFEHW+YN++ DELK L D V+++FYP     +NPY+ LL EVT RTA ++A WQAVGF
Sbjct: 255 GSFEHWFYNEKHDELKTLADYVIDRFYPYFRNSENPYKDLLTEVTLRTAHMIAHWQAVGF 314

Query: 255 MHGVMNTDNMSILGLTLDYGPFGFMEAFDARHICNHTDGQGRYSYQMQPRIGQWNCFALG 314
           MHGVMNTDNMSILGLTLDYGPFGFMEAF+A HICNHTD QGRYSY  QP+IG+WNC+ALG
Sbjct: 315 MHGVMNTDNMSILGLTLDYGPFGFMEAFNATHICNHTDQQGRYSYARQPQIGEWNCYALG 374

Query: 315 QAMLPLIGSVEQTEAALAGYEAVFQAQHDALLRAKLGLRTQQADDARLIEALFAILQANH 374
           QA+LPLIG V++T+AAL  Y+  F  + + L+ AKLGL+T+Q+DD +L ++LF ILQ +H
Sbjct: 375 QALLPLIGDVDETQAALRIYKPAFAEKFEELMHAKLGLKTRQSDDRQLFDSLFGILQDSH 434

Query: 375 VDFTLFFRRLGDLQISNTANDEALRDLILDRPAFDAWAAQYRARLRAEDSDDAARRLAMH 434
           VDFT FFR+LG+LQ +N+ + E LRDL +DR AFDAWA QY ARL+ E+S D+ R+LAM 
Sbjct: 435 VDFTTFFRQLGNLQPANSDSHEDLRDLFIDRAAFDAWALQYGARLQQENSIDSERKLAMD 494

Query: 435 QVNPKYVLRNYLAQIAIERAQHKDFSEVARLQAILSRPFDEQPEFDQYADLPPDWASHLE 494
            VNPKY+LRNYLAQIAIE+AQ+KDFSEVA+L  +L +PFDEQP  ++YA LPPDWA+ LE
Sbjct: 495 AVNPKYILRNYLAQIAIEKAQNKDFSEVAKLLQVLEKPFDEQPGNEKYAALPPDWANDLE 554

Query: 495 VSCSS 499
           VSCSS
Sbjct: 555 VSCSS 559


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,205,891
Number of extensions: 51689
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 412
Effective length of database: 899,382
Effective search space: 370545384
Effective search space used: 370545384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)