BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2095.p
         (131 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980117|ref|YP_001353237.1| peptide methionine sulfoxide re...   228   7e-62
gi|152983053|ref|YP_001352638.1| methionine sulfoxide reductase ...   132   8e-33

>gi|152980117|ref|YP_001353237.1| peptide methionine sulfoxide
           reductase [Janthinobacterium sp. Marseille]
          Length = 135

 Score =  228 bits (582), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 105/131 (80%), Positives = 115/131 (87%)

Query: 1   MNKRVEKTEAEWRAQLDPIEYQVTREAATERAFTGRYWDHHEAGTYTCVCCDTPLFTSDA 60
           M  +V KT+AEWRA LD  EY VTR AATE  FTGRYWDHHE G YTCVCC+TPLF SD 
Sbjct: 1   MIDKVIKTDAEWRAMLDDEEYDVTRHAATEAPFTGRYWDHHEFGIYTCVCCNTPLFASDT 60

Query: 61  KFDSGCGWPSYFEPIDAANVREKVDRSYGMIRTEIICNVCDAHLGHVFPDGPPPTGLRYC 120
           KFDSGCGWPSYF+P++ ANV+EK+DR+YGMIRTE+ICNVCDAHLGHVF DGPPPTGLRYC
Sbjct: 61  KFDSGCGWPSYFKPLNPANVKEKIDRAYGMIRTEVICNVCDAHLGHVFNDGPPPTGLRYC 120

Query: 121 INSASLRFDPA 131
           INSASLRFDPA
Sbjct: 121 INSASLRFDPA 131


>gi|152983053|ref|YP_001352638.1| methionine sulfoxide reductase B
           [Janthinobacterium sp. Marseille]
          Length = 147

 Score =  132 bits (332), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 78/116 (67%), Gaps = 1/116 (0%)

Query: 14  AQLDPIEYQVTREAATERAFTGRYWDHHEAGTYTCVCCDTPLFTSDAKFDSGCGWPSYFE 73
           +QL   + +VT+E+ TER F+G Y DH E G Y  +    PLF S  KFDSGCGWPS+ +
Sbjct: 11  SQLTAEQRRVTQESGTERPFSGEYNDHKEPGIYVDIVSGEPLFASSDKFDSGCGWPSFTK 70

Query: 74  PIDAANVREKVDRSYGMIRTEIICNVCDAHLGHVFPDGPPP-TGLRYCINSASLRF 128
           PI  AN+    D S+GM RTEI     D+HLGHVFPDGP    GLRYCINSA+LRF
Sbjct: 71  PIVPANLNPLFDTSHGMTRTEIRSTHGDSHLGHVFPDGPTDRGGLRYCINSAALRF 126


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 317,797
Number of extensions: 11550
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 58
Effective length of database: 951,140
Effective search space: 55166120
Effective search space used: 55166120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)