BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2093.p
         (94 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980402|ref|YP_001353235.1| BolA stress-induced morphogen [...    90   2e-20
gi|152981871|ref|YP_001354981.1| BolA family transcriptional reg...    54   2e-09

>gi|152980402|ref|YP_001353235.1| BolA stress-induced morphogen
          [Janthinobacterium sp. Marseille]
          Length = 89

 Score = 90.1 bits (222), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 70/85 (82%)

Query: 7  RVARITARLTATFSPTVCLVEDESALHAGHAGAASGGGHYRIRLVSNLFEGKNRLQRHRL 66
          R+ RI A+L  TF+P  C +EDESALHAGHAGAASGGGH+R+R++S  FE ++R+ RHRL
Sbjct: 4  RMDRIQAKLNETFAPLECQLEDESALHAGHAGAASGGGHFRLRIISAQFEKQSRINRHRL 63

Query: 67 VYDCLSDLMQQEIHALAIVAHSPSE 91
          VYDCL D+M +EIHALAI A +PSE
Sbjct: 64 VYDCLDDMMHKEIHALAITALAPSE 88


>gi|152981871|ref|YP_001354981.1| BolA family transcriptional
          regulator [Janthinobacterium sp. Marseille]
          Length = 78

 Score = 53.5 bits (127), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 21 PTVCLVEDESA--LHAGHAGAASGGGHYRIRLVSNLFEGKNRLQRHRLVYDCLSDLMQQE 78
          PT  LV+   A  L   H   +  G H+   +VS  F GK  +QRH+LVY  L D M++E
Sbjct: 3  PTPELVKSYIAAGLDCSHLEVSGDGAHFEAVIVSEAFAGKRLIQRHQLVYAALGDRMREE 62

Query: 79 IHALAIVAHSPSE 91
          IHAL++   +P E
Sbjct: 63 IHALSMKTLTPEE 75


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 148,128
Number of extensions: 3124
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 2
Length of query: 94
Length of database: 1,221,021
Length adjustment: 63
Effective length of query: 31
Effective length of database: 988,110
Effective search space: 30631410
Effective search space used: 30631410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 122 (51.6 bits)