BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2092.p (258 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980669|ref|YP_001353234.1| PpiC-type peptidyl-prolyl cis-t... 414 e-117 gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isome... 86 2e-18 gi|152980819|ref|YP_001354064.1| peptidyl-prolyl cis-trans isome... 78 6e-16 gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans isome... 60 2e-10 >gi|152980669|ref|YP_001353234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp. Marseille] Length = 259 Score = 414 bits (1063), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/259 (76%), Positives = 235/259 (90%), Gaps = 1/259 (0%) Query: 1 MTFKPARLLVLLFAIASVPAFAQNLAVVNGKAIPSSRADLMVKQMTAQGQPDSPQLRSAI 60 MT KPA LL L AS+PA AQNLAVVNGK IPSSRAD+M+KQMT+QGQ D+P+LR+ + Sbjct: 1 MTLKPAHLLAALIVSASLPAMAQNLAVVNGKPIPSSRADVMIKQMTSQGQQDTPELRAMV 60 Query: 61 KEELINREILMQEADKQGLANSTDVKNQLELARQSIVIRALIADYLKKNPVSDADIKAEY 120 K+ELINREIL+QEADK GL DVKNQ+E+ARQSI+IRAL+ADYLKKNPV DADIKAEY Sbjct: 61 KDELINREILIQEADKLGLGAQADVKNQIEIARQSILIRALVADYLKKNPVKDADIKAEY 120 Query: 121 DKFKAQAGDKEYHARHILVDKKEDAEAIIAKLKAGTKFEDLAK-QSKDTGSAANGGDLDW 179 D+FKAQA DKEYHARHILV+K+++A+AIIAKLK G KFEDLAK SKD GSAANGGDLDW Sbjct: 121 DRFKAQASDKEYHARHILVEKEDEAKAIIAKLKGGAKFEDLAKASSKDPGSAANGGDLDW 180 Query: 180 ATPASFVKPFSDAMVALKKGEITQTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEAL 239 A+PASFVKPFSDAMVAL+KG++++TPV+TQFG+HVIKL+DVR AK+PTL+EVKPQIAE+L Sbjct: 181 ASPASFVKPFSDAMVALQKGQLSETPVKTQFGYHVIKLDDVRTAKIPTLEEVKPQIAESL 240 Query: 240 QQKKLQAYQEQLRAKAKVQ 258 QQKKLQA+Q+QLR+KAK+Q Sbjct: 241 QQKKLQAFQQQLRSKAKIQ 259 >gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp. Marseille] Length = 638 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 16/147 (10%) Query: 111 VSDADIKAEYDKFKAQAG-DKEYHARHILVDKKEDA------------EAIIAKL-KAGT 156 VSDADIK+ Y++ Q G D++ A HIL+ +DA E ++ L K+ Sbjct: 246 VSDADIKSYYEQNAKQYGVDEQRRASHILIAANKDAPAAEKAAAKAKAEKLLETLRKSPQ 305 Query: 157 KFEDLAKQ-SKDTGSAANGGDLDWATPASFVKPFSDAMVALKKGEITQTPVQTQFGWHVI 215 F LAK+ S D GSA GGDLD+ + VKPF DA LK+GE++ V++ +G+H+I Sbjct: 306 DFAKLAKENSNDPGSAERGGDLDFFSKGMMVKPFEDAAFKLKQGELSDL-VESDYGFHII 364 Query: 216 KLEDVRPAKVPTLDEVKPQIAEALQQK 242 K+ ++PA + L++VK IA ++++ Sbjct: 365 KVTAIKPATLKPLEQVKGDIANDIRKQ 391 >gi|152980819|ref|YP_001354064.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Janthinobacterium sp. Marseille] Length = 307 Score = 77.8 bits (190), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 35/236 (14%) Query: 48 QGQPDSPQLRSAIK----------EELINREILMQEADKQGLANSTDVKNQLELARQSIV 97 QG P++ R+AIK + + E L++EA +G +VK +++ A + + Sbjct: 56 QGMPEAE--RAAIKNNRAGVENWLRQRVTSEALLREAQSKGWGERPEVKAKVDAAAREVT 113 Query: 98 IRALIADYLK---KNPV---SDADIKAEYDKFKAQAG-DKEYHARHI-LVDKKEDAEAI- 148 R + YL+ + P SDA++KA Y++ KA Y I L DA A Sbjct: 114 ARIVSTSYLESVAQVPATYPSDAEVKAAYEQGKANFNLPASYRVAQIYLASTGTDAAATT 173 Query: 149 --------IAKLKAGTKFEDLAK-QSKDTGSAANGGDLDWATPASFVKPFSDAMVALKKG 199 +A G F LA+ +S+D SA GG++ + DA+ LK G Sbjct: 174 KLRDEAKKLATQARGGDFAALARSRSQDPRSAERGGEVGMLPLEQMLPEVRDAVAKLKVG 233 Query: 200 EITQTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEAL----QQKKLQAYQEQL 251 ++++ PVQ+ G+H++KL + +PA+ TL+E+KP++ AL QQ+ +QA+ L Sbjct: 234 QVSE-PVQSPSGFHIVKLLETQPARTATLEEIKPRLQTALRDQRQQQLIQAHMAGL 288 >gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp. Marseille] Length = 469 Score = 59.7 bits (143), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 11/96 (11%) Query: 130 KEYHARHILVDKKEDAEAIIAKLK----------AGTKFEDLAKQSKDTGSAANGGDLDW 179 K+ HA HIL+ + A A+ K FE+LAK + SAA GGDL W Sbjct: 323 KQTHASHILIKVNQVVSAAEARRKLLELKQRLDNKAATFEELAKLYSNDFSAAKGGDLGW 382 Query: 180 ATPASFVKPFSDAMVALKKGEITQTPVQTQFGWHVI 215 P V F AM AL G++++ P+++ FG+H+I Sbjct: 383 IYPGDTVPEFERAMDALPIGQVSE-PIESPFGYHLI 417 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.129 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 553,363 Number of extensions: 21792 Number of successful extensions: 76 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 4 Length of query: 258 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 177 Effective length of database: 921,564 Effective search space: 163116828 Effective search space used: 163116828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)