BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2088.p
         (522 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980401|ref|YP_001353229.1| hypothetical protein mma_1539 [...   529   e-151

>gi|152980401|ref|YP_001353229.1| hypothetical protein mma_1539
           [Janthinobacterium sp. Marseille]
          Length = 502

 Score =  529 bits (1363), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/503 (57%), Positives = 364/503 (72%), Gaps = 8/503 (1%)

Query: 3   ALYSVAEIRQVEQAALSALPPYTLMQRAGAAIAEQAQQLLCSATASSPSVLILAGPGNNG 62
           ALY+VAEIR++EQAAL+  P Y LMQRAG A  E A QLL S+      VL+LAGPGNNG
Sbjct: 6   ALYTVAEIREIEQAALANSPSYALMQRAGTAAGELAYQLLQSSDKER-RVLVLAGPGNNG 64

Query: 63  GDALEAACLLEEAGIEVSVQLHADPSRQPPDARCALARAREAEIQFIDDLSDAALRAQSW 122
           GDALEAA  L  AG++VS+ +       PPDA+ AL RA+ ++  FI D S AA+    W
Sbjct: 65  GDALEAASQLMNAGLKVSIIMPLGADGLPPDAQQALKRAKASKANFITD-STAAIGNTDW 123

Query: 123 ALVIDGLFGIGLARAPGPALRPIIDYVNSLRCPVLSIDVPSGLDADTGSIIGARDGVAVQ 182
           ALVIDGLFGIGL+RA    +  +I  VN L CP+L++DVPSGL+ADTG+I+G  +G+A+Q
Sbjct: 124 ALVIDGLFGIGLSRAINGPVGELIASVNQLSCPILALDVPSGLNADTGAIVGDAEGIAIQ 183

Query: 183 ATHTITFIGDKPGLHTCDGSDHSGHIVVEPLDIEPRLLRPARAFLNGPQSFATALKPRAN 242
           ATHTITFIG+K GLHTC+G DH+G + +  LDI      P+   LN P+ FA+ L+PR +
Sbjct: 184 ATHTITFIGNKAGLHTCEGRDHAGIVSLATLDIAAERFPPSHMQLNRPELFASCLRPRRH 243

Query: 243 NSHKGSYGDVIVVGGARGMAGAPVLAARTAAFGGAGRVYVAFVDDGLAYDDKHPELMFRL 302
           N+HKGSYGDV V+GG+ GM GA VLAAR AA  GAGRV++A + D L YD    ELM RL
Sbjct: 244 NTHKGSYGDVSVLGGSHGMVGAAVLAARAAAKCGAGRVFIACLADSLLYDSMQAELMSRL 303

Query: 303 ADRVEFGASAALVVGPGMGTSRHAHDLLARALESEADIVIDADALNLISAEPTLQHKLHS 362
           A  +++ ++   V GPG+GTSR A DLL +A+ +   +VIDADALNLI +EP LQ K+ +
Sbjct: 304 ASNIDY-STTTTVAGPGLGTSRLARDLLGKAMTANTPLVIDADALNLIGSEPALQEKMLA 362

Query: 363 RSHTGAAITSIITPHPLEAARLLDSTTQQVQQDRPQAARLLARQFNAITVLKGAGTVIAF 422
           RS       +IITPHPLEAARLL STTQQ+Q +R  AAR LA  F A T+LKG+GTVIA 
Sbjct: 363 RSA-----ATIITPHPLEAARLLASTTQQIQGNRIAAARALAGTFRATTILKGSGTVIAA 417

Query: 423 PDGQIAINPSGNPALSTAGTGDVLSGLCGALLAQGWPTRAAALAATWIHGAAADQLVAAG 482
           PDG + +N +GNPAL+TAG+GDVL+GL GALLAQG P   AALAA ++HG AAD+LV  G
Sbjct: 418 PDGTVVLNTTGNPALATAGSGDVLAGLSGALLAQGCPEWEAALAAVYLHGLAADELVRRG 477

Query: 483 QGPVGLTASEFIPAIRAVFNQIL 505
            GP+GLTA E IP IR+V NQ++
Sbjct: 478 IGPIGLTAGELIPEIRSVLNQLV 500


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,207,718
Number of extensions: 50926
Number of successful extensions: 199
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 434
Effective length of database: 895,685
Effective search space: 388727290
Effective search space used: 388727290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)