BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2087.p
         (314 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980592|ref|YP_001352017.1| transporter of the DMT superfam...    54   9e-09

>gi|152980592|ref|YP_001352017.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 304

 Score = 54.3 bits (129), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 21/233 (9%)

Query: 99  IFFSVLKIVPLAEGTAMNFCAPLI---VLAISPWLLGERSYVSRW---IAVLIGFSGMLI 152
           ++F  + ++PLA    +N+ AP+    +L ++ W  G+R +   W   +A+   F G+ +
Sbjct: 71  LWFCAIGLLPLATAMTLNYMAPIWISGILFVAAWRAGKRRF--EWGLVLAITASFVGVTL 128

Query: 153 VIRPSGDIPPY-GVALGLISALTQALLSILNRKASQADNPMV-TLFYGALVGSVASTLMV 210
           ++RPS     + G  LGL S    AL  +  R   Q   P    +FY +  G +A     
Sbjct: 129 LLRPSIHADQWLGGFLGLCSGALSALAYLQVRHLGQLGEPESRVVFYFSATGFIAGLAGC 188

Query: 211 PFFWTSHTPSMVELA--------ILVSTGITSTIGHFLQNTAYKHAEASVLTPFFYAQII 262
            F    H  S+  L         +L+S G+ + I       AY+     V     Y  I+
Sbjct: 189 LFGPGLHGESISLLRSHSTYGMFLLLSIGVFAAIAQMAMTRAYRLGNTLVTANLQYTGIV 248

Query: 263 SACGMGWLVFGQFPDSITVLGIAIICASGIGIAYIEHKRA---HPLPPADPME 312
            +   G L++       + LGIAII  SGI   +   + +     + PADP+ 
Sbjct: 249 FSSIWGVLIWSDILGFFSWLGIAIILVSGIVATFYNIRNSATVKAVTPADPIS 301


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 662,797
Number of extensions: 23842
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 231
Effective length of database: 914,170
Effective search space: 211173270
Effective search space used: 211173270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)