BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2086.p (234 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase com... 365 e-103 gi|152982345|ref|YP_001352956.1| ABC-type transport system, invo... 191 4e-50 gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [J... 162 2e-41 gi|152981146|ref|YP_001354830.1| cell division ATP-binding prote... 137 6e-34 gi|152981558|ref|YP_001355169.1| ATP-binding/permease fusion ABC... 132 1e-32 >gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase component [Janthinobacterium sp. Marseille] Length = 229 Score = 365 bits (938), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/234 (79%), Positives = 204/234 (87%), Gaps = 7/234 (2%) Query: 1 MPASATASPAIIAAIEVLQLSKHVADVAAPSGRLTILSGIDFTVAAGTTVAIVGASGSGK 60 MP S+T PAI E + L+K VAD +G LTIL +DFTV AG T+AIVGASGSGK Sbjct: 1 MPESSTLYPAI----EAINLTKRVADA---TGELTILQAVDFTVQAGDTLAIVGASGSGK 53 Query: 61 STLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENV 120 STLLGLLAGLDTPS+G+V+LDG DI+ALDEDGRA LRK KLGFVFQSFQLLGHLNALENV Sbjct: 54 STLLGLLAGLDTPSDGTVKLDGTDIFALDEDGRAGLRKSKLGFVFQSFQLLGHLNALENV 113 Query: 121 MLPLELRGDSQARTKAEQMLGRVGLGSRLKHYPKYLSGGEQQRVALARAFVTEPPLLFAD 180 MLPLELRGD +A+ KAE ML RVGL +RLKHYPKYLSGGEQQRVALARAFV+EPPLLFAD Sbjct: 114 MLPLELRGDGKAKEKAEAMLARVGLSTRLKHYPKYLSGGEQQRVALARAFVSEPPLLFAD 173 Query: 181 EPTGSLDAATGESVIQLMFELNRERGSTLVLVTHDNGIAARCERTLTIAAGRLV 234 EPTGSLDAATGE+VIQLMFELNRERGSTLVLVTHD IAA C+RT+TI+AGRLV Sbjct: 174 EPTGSLDAATGEAVIQLMFELNRERGSTLVLVTHDPSIAALCKRTITISAGRLV 227 >gi|152982345|ref|YP_001352956.1| ABC-type transport system, involved in lipoprotein release, ATPase component [Janthinobacterium sp. Marseille] Length = 228 Score = 191 bits (485), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 100/198 (50%), Positives = 128/198 (64%), Gaps = 2/198 (1%) Query: 34 LTILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGR 93 + +L ++ + G VAIVGASGSGKSTLL LL GLDTPS GSV L +D LDE R Sbjct: 22 VNVLKDVNLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGSVTLLNQDFATLDEKKR 81 Query: 94 ALLRKRKLGFVFQSFQLLGHLNALENVMLPLELR--GDSQARTKAEQMLGRVGLGSRLKH 151 LR + LGFV+Q LL +AL+NV +PL +R S+A KA +L RVGL R+ H Sbjct: 82 GDLRNKSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPRSEAHEKARAILARVGLEHRVTH 141 Query: 152 YPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRERGSTLVL 211 P LSGGE+QRVALARA VT+P + ADEPTG+LD T LM EL+R G+ ++ Sbjct: 142 VPGELSGGERQRVALARALVTQPACVLADEPTGNLDRVTAHKTFDLMLELSRTLGTAFII 201 Query: 212 VTHDNGIAARCERTLTIA 229 VTHD +A C+R + ++ Sbjct: 202 VTHDVELATHCDRIMRLS 219 >gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [Janthinobacterium sp. Marseille] Length = 657 Score = 162 bits (409), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 127/201 (63%), Gaps = 3/201 (1%) Query: 36 ILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRAL 95 +L GID + G VAI+GASGSGKSTL+ +L LD P+ GS G D+ D D A+ Sbjct: 37 VLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTGSYHFMGRDVSGFDRDELAM 96 Query: 96 LRKRKLGFVFQSFQLLGHLNALENVMLPLELRG--DSQARTKAEQMLGRVGLGSRLKHYP 153 LR+ GFVFQS+ L+ +A+ENV +P G ++ +A+ +L +GL R H P Sbjct: 97 LRRDDFGFVFQSYNLIASASAVENVEVPAMYSGLPPAERHARAQALLAELGLAERSHHRP 156 Query: 154 KYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRERGSTLVLVT 213 LSGG+QQRV+++RA + ++ ADEPTG+LD+ +G+ V++L+ +L+ RG T++L+T Sbjct: 157 NQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKSGQDVMKLLADLS-ARGHTVLLIT 215 Query: 214 HDNGIAARCERTLTIAAGRLV 234 H +A +R + I G ++ Sbjct: 216 HAKEVADHAQRLIEIKDGHIL 236 >gi|152981146|ref|YP_001354830.1| cell division ATP-binding protein FtsE [Janthinobacterium sp. Marseille] Length = 227 Score = 137 bits (345), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 121/222 (54%), Gaps = 10/222 (4%) Query: 15 IEVLQLSKHVADVAAPSGRLTILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPS 74 IE Q+SK + +T LS I +V G V + G SG+GKSTLL L+A ++ PS Sbjct: 2 IEFHQVSKKY------TQNVTALSDISLSVGKGELVFLAGPSGAGKSTLLKLIAAMERPS 55 Query: 75 EGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDSQ--A 132 EGSV + G DI + G LR R LG +FQ +LL + L NVMLPL + G S+ A Sbjct: 56 EGSVIVSGHDISRIKTSGLPYLR-RNLGLIFQQQRLLADRSVLANVMLPLIVCGASRPDA 114 Query: 133 RTKAEQMLGRVGLGSRLKHYPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGE 192 +A L +VGL P LSGGEQQRVA+ARA V P ++ ADEPT +LD A Sbjct: 115 ERRARAALDKVGLLDMASSGPLTLSGGEQQRVAIARAIVNRPQIILADEPTANLDRAAAN 174 Query: 193 SVIQLMFELNRERGSTLVLVTHDNGIAARCERTLTIAAGRLV 234 V+ + + G T ++ THD R + + GR++ Sbjct: 175 KVLDALKAFH-SVGVTCLISTHDEQFLDTATRVIYLDHGRII 215 >gi|152981558|ref|YP_001355169.1| ATP-binding/permease fusion ABC transporter [Janthinobacterium sp. Marseille] Length = 595 Score = 132 bits (333), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 105/173 (60%), Gaps = 3/173 (1%) Query: 64 LGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLP 123 + LL LD PS GS G D+ LD D A LR+ GFVFQ + L+ +A ENV +P Sbjct: 1 MHLLGCLDRPSSGSYLFSGRDVETLDSDELAWLRREAFGFVFQGYHLIATESARENVEVP 60 Query: 124 LELRGDSQAR--TKAEQMLGRVGLGSRLKHYPKYLSGGEQQRVALARAFVTEPPLLFADE 181 G S+A +A +L R+GLG +L + P LSGG+QQRV++ARA + ++ ADE Sbjct: 61 AIYAGMSEADRAARASALLTRLGLGDKLDNRPSQLSGGQQQRVSIARALMNGGRIILADE 120 Query: 182 PTGSLDAATGESVIQLMFELNRERGSTLVLVTHDNGIAARCERTLTIAAGRLV 234 PTG+LD+ +G V+ L+ EL + G T++L+THD +A + R + I G +V Sbjct: 121 PTGALDSKSGAEVMALLNELA-DAGHTIILITHDRDVADQARRVIEIRDGEIV 172 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 427,510 Number of extensions: 15415 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 65 Length of query: 234 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 154 Effective length of database: 925,261 Effective search space: 142490194 Effective search space used: 142490194 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)