BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2083.p (639 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isome... 787 0.0 gi|152980669|ref|YP_001353234.1| PpiC-type peptidyl-prolyl cis-t... 95 2e-20 gi|152980819|ref|YP_001354064.1| peptidyl-prolyl cis-trans isome... 86 6e-18 gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans isome... 74 4e-14 >gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp. Marseille] Length = 638 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/633 (63%), Positives = 493/633 (77%), Gaps = 3/633 (0%) Query: 1 MFDFIRTHQRLMQFLLLLFIFPSFAFFGLEGYSRLTDDSG-VAKVAGQTITKEEWDAAHR 59 MFDFIRTHQRLMQFLLLL IFPSFA FGLE Y+ + D S VAKV GQ IT+ EWDAA R Sbjct: 1 MFDFIRTHQRLMQFLLLLVIFPSFALFGLESYTSMGDSSTTVAKVDGQAITQPEWDAAQR 60 Query: 60 QQLERMRQVYGNQFDAKIFDSPQARRAILDNLIAQRALGAEVVANKLVVPDQVLQQSILQ 119 +Q+ER RQ++G QFD K+FD+P+A++ +LD LIAQR L AE NKL V DQ LQQ+I+ Sbjct: 61 EQMERFRQMFGGQFDPKMFDTPEAKQDVLDGLIAQRVLAAEAKRNKLSVSDQTLQQTIMG 120 Query: 120 IPGLTKPDGSFDNEQYRVLLAAQGLTPKSYEASLRREMAVQQLNAAIQSTAFAPKTVAEN 179 I GLT DG FD E+Y+ LLAAQG+TP YEASLR+++ VQQ+NAAIQSTAFAP ++A+ Sbjct: 121 IAGLTTADGKFDVERYKSLLAAQGMTPAMYEASLRQDLIVQQVNAAIQSTAFAPDSLAQR 180 Query: 180 LSNLNDQERTVQMLNFKPESYAAQVKISDDMLKAYYDKNGARFETPEQADIEYVVLDAAA 239 LS L +QER VQ L FK YA+QVK++DDMLKAYYDK+ F PEQ EYVVL A A Sbjct: 181 LSELGEQEREVQYLTFKAADYASQVKVTDDMLKAYYDKSN-EFSVPEQVKAEYVVLTADA 239 Query: 240 VAAQASVTDDDIKSYYEQNQKQYTTEEQRRASHILIAVKKDASAADKAAAKSKAEALVAQ 299 +A+Q +V+D DIKSYYEQN KQY +EQRRASHILIA KDA AA+KAAAK+KAE L+ Sbjct: 240 LASQINVSDADIKSYYEQNAKQYGVDEQRRASHILIAANKDAPAAEKAAAKAKAEKLLET 299 Query: 300 LRKNPGDFAKLAKADSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGQISDPVESDF 359 LRK+P DFAKLAK +S DPGSAE GGDL +F KG MVKPFEDAAF LKQG++SD VESD+ Sbjct: 300 LRKSPQDFAKLAKENSNDPGSAERGGDLDFFSKGMMVKPFEDAAFKLKQGELSDLVESDY 359 Query: 360 GYHIIEVTGIKPAAVKPLDAVKAEIGAEIKKQIAAKKYSEMADQFNNLVYENGDSLKAVS 419 G+HII+VT IKPA +KPL+ VK +I +I+KQ+ KKY+E AD F+N VYE DSLK+V+ Sbjct: 360 GFHIIKVTAIKPATLKPLEQVKGDIANDIRKQLVTKKYAETADVFSNTVYEQSDSLKSVA 419 Query: 420 DKLKLKIQTASGVTRTPNPAAGA-APYNNAKFLTALFTDDVIKGKHNSEAVQTAPNTLVA 478 DKLKLKI+T + ++R PNPA A AP+N+ KFL+ALF++D +K K N+EAV+ APNTL+A Sbjct: 420 DKLKLKIETVNNLSRQPNPAVAATAPFNSPKFLSALFSEDSLKNKRNTEAVEVAPNTLIA 479 Query: 479 GRMTSYKPVTKRPFDEVKAEVQKDVLAAEEQALAVKAGQERLAQLQAKDDATGFSDPKVV 538 GR+ YKP +KRPFDEVKA+V+ V+ E LA AG+E+LA L+AKDDA+GFS + V Sbjct: 480 GRVVDYKPASKRPFDEVKAQVRDRVIQTEALVLAKNAGEEKLAALKAKDDASGFSATQTV 539 Query: 539 SRVKSEGWTQEAFNAVMKADTAKLPAYAGAETTGLGYQIYRITKVEQPKTVDTARRKAEQ 598 SR KS+G F AVMKADT+KLP+Y G E G GY + R+T+V QP VD A+R+AEQ Sbjct: 540 SRAKSQGVNPALFLAVMKADTSKLPSYVGVEVPGQGYGVLRVTRVVQPSNVDKAKRQAEQ 599 Query: 599 EQITAALSQQEALGYLDYLREKAKTKLLKGATA 631 +QITAAL+Q+E YLD L+EKAK K++K A A Sbjct: 600 QQITAALAQEEMQAYLDVLKEKAKVKIIKPAVA 632 >gi|152980669|ref|YP_001353234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp. Marseille] Length = 259 Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 92/147 (62%), Gaps = 15/147 (10%) Query: 246 VTDDDIKSYYEQNQKQYTTEEQRRASHILIAVKKDASAADKAAAKSKAEALVAQLRKNPG 305 V D DIK+ Y++ + Q + +E A HIL+ K+D +A+A++A+L K Sbjct: 111 VKDADIKAEYDRFKAQASDKE-YHARHILVE-KED-----------EAKAIIAKL-KGGA 156 Query: 306 DFAKLAKADSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGQISD-PVESDFGYHII 364 F LAKA S+DPGSA NGGDL + + VKPF DA +L++GQ+S+ PV++ FGYH+I Sbjct: 157 KFEDLAKASSKDPGSAANGGDLDWASPASFVKPFSDAMVALQKGQLSETPVKTQFGYHVI 216 Query: 365 EVTGIKPAAVKPLDAVKAEIGAEIKKQ 391 ++ ++ A + L+ VK +I ++++ Sbjct: 217 KLDDVRTAKIPTLEEVKPQIAESLQQK 243 >gi|152980819|ref|YP_001354064.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Janthinobacterium sp. Marseille] Length = 307 Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 5/146 (3%) Query: 247 TDDDIKSYYEQNQKQYTTEEQRRASHILIA-VKKDASAADKAAAKSKAEALVAQLRKNPG 305 +D ++K+ YEQ + + R + I +A DA+A K + +A+ L Q R G Sbjct: 134 SDAEVKAAYEQGKANFNLPASYRVAQIYLASTGTDAAATTKL--RDEAKKLATQARG--G 189 Query: 306 DFAKLAKADSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGQISDPVESDFGYHIIE 365 DFA LA++ SQDP SAE GG++G M+ DA LK GQ+S+PV+S G+HI++ Sbjct: 190 DFAALARSRSQDPRSAERGGEVGMLPLEQMLPEVRDAVAKLKVGQVSEPVQSPSGFHIVK 249 Query: 366 VTGIKPAAVKPLDAVKAEIGAEIKKQ 391 + +PA L+ +K + ++ Q Sbjct: 250 LLETQPARTATLEEIKPRLQTALRDQ 275 >gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp. Marseille] Length = 469 Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 266 EQRRASHILIAVKKDASAADKAAAKSKAEALVAQLRKNPGDFAKLAKADSQDPGSAENGG 325 +Q ASHILI V + SAA+ A+ K L +L F +LAK S D SA GG Sbjct: 323 KQTHASHILIKVNQVVSAAE---ARRKLLELKQRLDNKAATFEELAKLYSND-FSAAKGG 378 Query: 326 DLGYFGKGAMVKPFEDAAFSLKQGQISDPVESDFGYHIIEVT 367 DLG+ G V FE A +L GQ+S+P+ES FGYH+I VT Sbjct: 379 DLGWIYPGDTVPEFERAMDALPIGQVSEPIESPFGYHLILVT 420 Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 6/187 (3%) Query: 192 MLNFKPESYAAQVKISDDMLKAYYDKNG---ARFETPEQADIEYVVLDAAAVAAQASVTD 248 ML+ A Q K+S + +++G ++F + ++ L V + V+D Sbjct: 119 MLDRAMGRIAEQNKLSMPEFRKRLEEDGLVYSKFRNEIRDEMAIQRLREREVDNKVQVSD 178 Query: 249 DDIKSYYEQNQKQYTTEEQR-RASHILIAVKKDASAADKAAAKSKAEALVAQLRKNPGDF 307 +I +Y + T Q + ILI V ++A+ A +K +A+ +VAQL DF Sbjct: 179 VEIDAYMAAHNAPAATAPQELHIAQILIRVPENATQKQLADSKRRADEVVAQLAAG-ADF 237 Query: 308 AKLAKADSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGQISDPVESDFGYHIIEVT 367 AKLA A S D GG+LG+ + + F DA +L+ GQI+ V+S G+HI+++ Sbjct: 238 AKLASAYS-DGTDGLTGGELGWRSAERLPQLFVDATANLQDGQIAPIVKSGNGFHILKLL 296 Query: 368 GIKPAAV 374 G + +V Sbjct: 297 GRRTQSV 303 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.128 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,220,145 Number of extensions: 44666 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 5 Length of query: 639 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 550 Effective length of database: 891,988 Effective search space: 490593400 Effective search space used: 490593400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)