BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2081.p (377 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 249 1e-67 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 242 3e-65 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 226 2e-60 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 164 1e-41 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 154 6e-39 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 249 bits (637), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 135/310 (43%), Positives = 189/310 (60%), Gaps = 13/310 (4%) Query: 26 FLSVRAIEKRFGAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIVA 85 L +R + +RFG T +D +SL + GE LLGPSGCGKTTLLR IAG + DAGQI+ Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILL 62 Query: 86 AGRDISQLPPQSRDYGILFQSYALFPNLSVADNVAYGL--TGMKRQARQERVAAMLDMVG 143 G D++ +PP+ R +FQ+YALFP+++V N+A+ L + Q++V L+ V Sbjct: 63 DGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALEDVR 122 Query: 144 LAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQ 203 L G A+YP +LSGGQ+QRV++ARAL P LLLLDEPLSALDAQ+RE +Q+E+ LQK+ Sbjct: 123 LTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKE 182 Query: 204 FRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFIGHANWLP- 262 IT + VTHDQ EA+ ++ RIAVM G++EQ P +Y P S FVADFIG N Sbjct: 183 VGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIGTCNLFDG 242 Query: 263 -FTRVSGSQV-----AVGTLRLEVQPEEAELASGRLFCRPEAVELFASPACA----NRFQ 312 T++ G+ + +G ++ P + G + RPE ++ A N F Sbjct: 243 VVTQIDGNMMWLDVPGMGAVKAFTAPSVTVGSKGTIALRPEKTQVSAEIVRGVPDENHFD 302 Query: 313 ARVVDRIYLG 322 V + +Y+G Sbjct: 303 GYVKELLYMG 312 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 242 bits (617), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 132/283 (46%), Positives = 179/283 (63%), Gaps = 10/283 (3%) Query: 27 LSVRAIEKRFGAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIVAA 86 + V+ I+K+FG F AL+ VSL+ GE+ LLGPSGCGKTTLLR IAGLE+ D GQ++ Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 87 GRDISQLPPQSRDYGILFQSYALFPNLSVADNVAYGL------TGMKRQARQERVAAMLD 140 G D S + R G +FQ YALF +++V +N+A+GL T +E+V +L+ Sbjct: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKLLE 122 Query: 141 MVGLAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRL 200 +V L +YP QLSGGQ+QR+ALARALA P +LLLDEP ALDA+VR+ L+ +RRL Sbjct: 123 LVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRL 182 Query: 201 QKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFIGHANW 260 +T++ VTHDQEEA+ +AD+I +M G +EQ G P +VY PASPFV F+G+ N Sbjct: 183 HDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFLGNVN- 241 Query: 261 LPFTRVSGSQVAVGTLRLEVQPEEAEL--ASGRLFCRPEAVEL 301 L RV + + E PE AE G + RP +E+ Sbjct: 242 LFHGRVHEGILQSSGIAFEA-PEHAETQDTKGIGYVRPHDLEV 283 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 226 bits (576), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/241 (49%), Positives = 159/241 (65%), Gaps = 7/241 (2%) Query: 45 VSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIVAAGRDISQ----LPPQSRDY 100 +S +++GE+ CLLG SGCGKTT+LR IAG E AG+I G+++S P++R Sbjct: 33 LSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTVPEARHV 92 Query: 101 GILFQSYALFPNLSVADNVAYGLTGMKRQARQERVAAMLDMVGLAGSQAKYPGQLSGGQQ 160 G++FQ YALFP+LSV+DN+ +GL + R R+ +L +VGL + K+P +LSGGQQ Sbjct: 93 GVVFQDYALFPHLSVSDNIGFGLRKLAAAERNGRINKLLALVGLQAQEKKFPHELSGGQQ 152 Query: 161 QRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQFRITTLMVTHDQEEAMV 220 QRVALARALAP P LLLLDEP S LD +RE L E+R + K+ T ++VTHDQ EA Sbjct: 153 QRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFA 212 Query: 221 MADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFIGHANWLPFTRVSGSQ---VAVGTLR 277 +AD+I VMQ G I Q+ +Y RPA+ FVADFIG ++P T Q + +GTL Sbjct: 213 IADQIGVMQDGVIVQWDQAYNLYHRPANRFVADFIGLGVFVPGTVDKQRQDVAIELGTLP 272 Query: 278 L 278 L Sbjct: 273 L 273 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 164 bits (414), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/217 (41%), Positives = 129/217 (59%), Gaps = 11/217 (5%) Query: 27 LSVRAIEKRFG----AFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQ 82 + ++ + K F AL V+L + +GE VCL+G SGCGK+TLLR +AG E +G Sbjct: 14 IDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGS 73 Query: 83 IVAAGRDISQLPPQSRDYGILFQSYALFPNLSVADNVAYGLT--GMKRQARQERVAAMLD 140 G I P+ G++FQ Y LFP L+V +N+ +G + + +E A D Sbjct: 74 ANMYGMPIDGPSPER---GMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTD 130 Query: 141 MVGLAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRL 200 MVGL YPGQLSGG +QRVA+AR LA +LL+DEP ALDA RE LQ ++ + Sbjct: 131 MVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEI 190 Query: 201 QKQFRITTLMVTHDQEEAMVMADRIAVMQH--GRIEQ 235 ++ ++T + VTH EEA++++DR+ VM GRIE+ Sbjct: 191 WERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEE 227 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 154 bits (390), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 135/230 (58%), Gaps = 14/230 (6%) Query: 23 EQRFLSVRAIEKRF----GAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQ 78 +F+ ++ E F G F AL V+L V +GE + L+G SGCGK+TLL IAGL + Sbjct: 5 NSKFIDIQHAEMSFSTKKGIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQA 64 Query: 79 DAGQIVAAGRDISQLPPQSRDYGILFQSYALFPNLSVADNV------AYGLTGMKRQARQ 132 G ++ R+I+ P+ ++FQ+++L P L+ +NV + T K + + Sbjct: 65 TGGMLLCGNREIAGPSPER---AVVFQNHSLLPWLTCYENVYLAVERVFSATESKAELKA 121 Query: 133 ERVAAMLDMVGLAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREH 192 R A L +VGL+ ++ K P ++SGG +QRV +ARAL+ P +LL+DEP ALDA R H Sbjct: 122 -RTRAALALVGLSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAH 180 Query: 193 LQLEIRRLQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEV 242 LQ E+ ++ T +MVTHD +EA++++DRI ++ +G G EV Sbjct: 181 LQDELLKIVAATGSTVVMVTHDVDEAVLLSDRIVMLTNGPSATIGEILEV 230 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 805,780 Number of extensions: 31215 Number of successful extensions: 285 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 214 Number of HSP's successfully gapped: 69 Length of query: 377 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 292 Effective length of database: 906,776 Effective search space: 264778592 Effective search space used: 264778592 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)