BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2080.p (580 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permea... 72 1e-13 gi|152979941|ref|YP_001352418.1| iron(III) ABC-type transport sy... 66 8e-12 gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport... 62 1e-10 gi|152979981|ref|YP_001354795.1| spermidine/putrescine transport... 61 2e-10 >gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permease protein [Janthinobacterium sp. Marseille] Length = 302 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 129/307 (42%), Gaps = 28/307 (9%) Query: 9 PPMAHDQPQT-ARQGAAVTGTDRSQWLLAAFKWLLLALLALGLVGPLWFILAQAFMKPEG 67 PP + P + AR T W+ + LA L L L PL + A+A K Sbjct: 6 PPSSSAIPVSLARAPCVPAATLEPTWIRTLLIVVALAFLTLFLFVPLASVFAEALKKGWD 65 Query: 68 GWAGIQPFVDLFSHINFLPLLGRSLWVSAVTAVVTVPLAYVFAYALQRTCIPCKGLWRGI 127 + D S I ++ +TA + VPL VF A CI K +RG Sbjct: 66 AYIAAILEEDAVSAIK----------LTLLTAAIAVPLNLVFGVA-ASWCI-AKFDFRGK 113 Query: 128 GLL------PLLAPSLLPGIALIYLFGNQGLFKEWMDGS----IYGFWGILLGEVFYTFP 177 +L P ++ G+ + LFG QG F W+ ++ GI+L +F TFP Sbjct: 114 SILLTLIDLPFSVSPVISGLIYVLLFGAQGWFGGWLQEHNIKILFAVPGIVLATIFVTFP 173 Query: 178 HAMMILLSALSQADGRLYDAAHAMGASRWRIFTTVTLPATRYGLFGALCLVFTLTITDFG 237 L+ + +AA +GAS W+ F VTLP ++GL + L + +FG Sbjct: 174 FVARELIPLMQSQGSEEEEAALVLGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFG 233 Query: 238 -VPKITG---GAYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTFGLDGWLQRRQRA 293 V ++G G + + ++ + + + QF + LL + AL+T L +++ R R Sbjct: 234 AVSVVSGHIRGQTNTIPLQV-EILYNEYQFSAAFAVASLLAMLALVTLALKSFIEWRLRD 292 Query: 294 SMSSRSE 300 + E Sbjct: 293 THEQFQE 299 >gi|152979941|ref|YP_001352418.1| iron(III) ABC-type transport system permease protein [Janthinobacterium sp. Marseille] Length = 565 Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 120/489 (24%), Positives = 199/489 (40%), Gaps = 53/489 (10%) Query: 79 FSHI--NFLP-LLGRSLWVSAVTAVVTVPLAYVFAYALQRTCIPCKGLWRGIGLLPLLAP 135 FSH+ LP +G SL ++ + AV+T L A+ + P K + +LPL P Sbjct: 68 FSHLWATVLPEYIGNSLLLAMIVAVLTAVLGIGTAWLVAVFNFPGKKFFEWALILPLAMP 127 Query: 136 SLLPGIA--------------LIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHAMM 181 + + A L LFG QG + G G+L V Y P+ + Sbjct: 128 AYVVAYAYTDFLQFTGPVQSGLRALFGWQGPTYWFPQIRSVGGAGLLFAFVLY--PYVYL 185 Query: 182 ILLSALSQADGRLYDAAHAMGASRWRIFTTVTLPATRYGLFGALCLVFTLTITD------ 235 + +A + R++DAA +GA W+ F V+LP R + L T+ D Sbjct: 186 LARNAFIERSPRMWDAARTLGAGPWQAFCQVSLPLARPAAVAGIALALMETLADYGAVAY 245 Query: 236 FGVPKITGGAYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTFGLDGWLQRRQRASM 295 FGVP +T G Y + + + Q + G+LLL L R + ++ Sbjct: 246 FGVPTLTTGIYKSWYIFSDRNAAAQ-------IAGVLLLAVMGLMLMEQKSRGRARYYAV 298 Query: 296 SSRSEAYVPRPDWRRDGVNLLAVVLIAAAILLMIVVAMGASLVKLWPYNLQLTLQHYDFD 355 +RS A +P R G +A A ++L + L LW Q + + Sbjct: 299 GARSAAQLPTLLQGRQG--WMATAFCALPVVLGFFAPLLILLHLLW----QEEVISFSAR 352 Query: 356 NMDGGGWLAYWNSLRLACGTSVVGTIVIFSGAWLMEKTRGQAWLAPILRMLSFLPMAVPG 415 +D WL N++ L T+++ + A+ T + L + + + A+PG Sbjct: 353 YID---WLQ--NTIILGAVTALIAIAICVLMAYAARVTNSK--LQAVCNRIVSMGYAIPG 405 Query: 416 LVLGLGSL--LFFNHPANPFH----FLYGTMTLLVLCCIVHFYTTAHLTAVTALKQLDPE 469 V+ +G L L + N H L G++ LV +V F + T L ++ P Sbjct: 406 AVIAVGILIPLAYLDNWNAQHGVALVLSGSVIALVYAYLVRFLAVSFQTVQAGLLKITPS 465 Query: 470 FEAASLSLKVPLLKTFLRVTVPLCLPQMLEIFRYLFVSSMTTVSAVIFLYRPDTVLASVA 529 +A++ SL L +R+ VPL +L +FV + + A + + RP ++A Sbjct: 466 MDASARSLGHGLGAMLMRIHVPLLWRSVLTAGLLVFVDVVKELPATLTI-RPFN-FDTLA 523 Query: 530 VLNMDDAGD 538 V+ A D Sbjct: 524 VITHQLASD 532 >gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport system permease protein [Janthinobacterium sp. Marseille] Length = 259 Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 16/210 (7%) Query: 53 PLWFILAQAF--MKPEGGWAGIQP--FVDLFSHINFLPLLGRSLWVSAVTAVVTVPLAYV 108 PL ++ +F + W G + LF++ L G SL ++ V++ V+ L + Sbjct: 25 PLAIVVVYSFNDSRLNAEWVGFTLDWYRTLFANEEMLRAAGNSLIIALVSSAVSTLLGTM 84 Query: 109 FAYALQRTCIPCKGLWRGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGIL 168 +AL R I L + + L P+ P +L G++L+ F M G + Sbjct: 85 AGFALHRYKI---RLLQVLVLTPIAIPEILVGVSLLIFF--------VMLNLTLGMLSVT 133 Query: 169 LGEVFYTFPHAMMILLSALSQADGRLYDAAHAMGASRWRIFTTVTLPATRYGLFGALCLV 228 L + ++ +++ S LS D L +AA GA+ W+ F VTLP G+ + Sbjct: 134 LAHIAFSMGFVAIVVRSRLSGMDESLTEAARDCGATPWQAFRRVTLPLIMPGVVAGALMA 193 Query: 229 FTLTITDFGVPKITGGAY-SVLAVEAYKAV 257 FTL+I DF + T GA S L ++ Y + Sbjct: 194 FTLSIDDFVITFFTAGANTSTLPLQIYSMI 223 >gi|152979981|ref|YP_001354795.1| spermidine/putrescine transport system permease protein [Janthinobacterium sp. Marseille] Length = 321 Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 16/203 (7%) Query: 72 IQPFVDLFSHINFLPLLGRSLWVSAVTAVVTVPLAYVFAYALQRTCIPCKGLWRGIGLLP 131 ++ F F+ + + +SL + +T +V + +AY A + R+ + L + +LP Sbjct: 85 LESFTPFFTDFIYTAIFLKSLLFAVITTLVCLTMAYPLALLIARSPQKWRNLLVLLVILP 144 Query: 132 LLAPSLLPGIALIYLFGNQGLFKEWMDG--SIYGF---------WGILLGEVFYTFPHAM 180 + L+ A + L G Q ++ ++GF + +++G V+ P + Sbjct: 145 FWSNFLIRIYAWMILLGPQSALTRGLNAVLDVFGFEPVTLLYSAFAVIVGLVYVHLPFMV 204 Query: 181 MILLSALSQADGRLYDAAHAMGASRWRIFTTVTLPATRYGLFGALCLVFTLTITDFGVPK 240 + L + L + D L DAA +GA +W+ F VT P + G++ LVF + F V Sbjct: 205 LPLYANLEKHDPALLDAAQDLGAGKWQTFWRVTFPLSLPGIYAGAALVFIPALGIFAVSD 264 Query: 241 ITGGAYSVLAVEAYKAVVGQQQF 263 I GG ++ K QQF Sbjct: 265 ILGGTGGIMIGNVIK-----QQF 282 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.140 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,135,515 Number of extensions: 38303 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 9 Length of query: 580 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 492 Effective length of database: 895,685 Effective search space: 440677020 Effective search space used: 440677020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 132 (55.5 bits)