BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2079.p
         (343 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982498|ref|YP_001355360.1| phosphoglycerate transport regu...    88   9e-19

>gi|152982498|ref|YP_001355360.1| phosphoglycerate transport
           regulatory protein PgtC [Janthinobacterium sp.
           Marseille]
          Length = 448

 Score = 87.8 bits (216), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 8/262 (3%)

Query: 27  ATTLTVYTALEADQIKAYQAAFQKANPD--IEIKWVRDSTGIVTAKLLAEKANPQADVIW 84
           A  + V T+   + +  ++AAF+KA+P   +EI W R    +     L +      DV W
Sbjct: 31  AGKVVVMTSYPEEVVARFEAAFEKAHPGTRVEILWRRSGDAL---SYLRKPNQGDVDVYW 87

Query: 85  GLAATSLALLDKEGMLT--PYAPHGLSAIDAKYRSAANPPSWVGMDVWASAICFNTVEAQ 142
             A  +  +L KEG          GL A    +  +     ++  ++       N    Q
Sbjct: 88  TPAQRNFQILAKEGAFRRPDLDMKGLPAKVGGFPISDPAGFYLASEIAGYGFAINPQRLQ 147

Query: 143 KQGLPKPTSWADLTKPVYAGKIVMPNPASSGTGYLDVSAWLQMMGEEKGWAYMDALHKNI 202
            + LP+P  W DLT P +  +IV P P   G   + +   LQ  G +KGWA + ++  N 
Sbjct: 148 DKKLPQPKQWTDLTGPEWKDEIVFPVPGKVGFAPILIDIILQGYGWDKGWALLQSIGSNA 207

Query: 203 GQYTHSGSKPCKQAATGEFPIGIAFEYRAVKTKKEGAPIDVILPSEGLGWDIEATAIVKG 262
                 G+        G+  +G++ ++        GAP++ I P    G+      I+KG
Sbjct: 208 RLLGQGGANISDDVRNGQASVGVSIDFFIKSAIANGAPLEFIYPGI-TGYSPAHVGIMKG 266

Query: 263 SKNLEAAKKLADFSASKDAMAL 284
           + N  AA+  A F  S +   +
Sbjct: 267 APNPTAARAFATFVLSDEGQKI 288


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.129    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 840,462
Number of extensions: 34928
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 259
Effective length of database: 910,473
Effective search space: 235812507
Effective search space used: 235812507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)