BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2077.p (553 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982732|ref|YP_001353683.1| major facilitator transporter [... 929 0.0 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 469 e-133 gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 209 4e-55 gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 202 3e-53 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 143 3e-35 >gi|152982732|ref|YP_001353683.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 553 Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/549 (84%), Positives = 509/549 (92%) Query: 4 ASVNTTTRGITKEEKKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFAL 63 A+V+TT R IT EE+KVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFAL Sbjct: 2 ATVSTTDRSITPEERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFAL 61 Query: 64 LAFAAGFIVRPFGALVFGRLGDLVGRKYTFLVTILIMGASTFIVGVLPNYNSIGITAPII 123 LAFAAGFIVRPFGA+VFGRLGD++GRKYTFLVTI+IMG STFIVG+LPNY SIGI APII Sbjct: 62 LAFAAGFIVRPFGAIVFGRLGDMIGRKYTFLVTIVIMGTSTFIVGLLPNYASIGIAAPII 121 Query: 124 LIILRILQGLALGGEYGGAATYVAEHAPEGRRGSFTAWIQTTATMGLFLSLLVILGVRTS 183 LIILRILQGLALGGEYGGAATYVAEHAP G+RG+FT+WIQTTATMGLF+SLLVILG RT+ Sbjct: 122 LIILRILQGLALGGEYGGAATYVAEHAPHGKRGAFTSWIQTTATMGLFMSLLVILGTRTA 181 Query: 184 VGEAAFADWGWRIPFLVSILLLAISVWIRMSMNESPAFLKMKAEGKTSKAPLTEAFGQWK 243 +GE AFADWGWRIPFLVS+ LL ISVWIR+SMNESPAFLKMK+EGK SKAPLTEAF +W Sbjct: 182 MGEEAFADWGWRIPFLVSVFLLGISVWIRLSMNESPAFLKMKSEGKASKAPLTEAFAKWG 241 Query: 244 NLKLVILALVGLTAGQAVVWYTGQFYALFFLTQTLKVDGPTANLLIAAALLLATPFFLFF 303 NLK+VILAL+GLTAGQAVVWYTGQFYALFFLTQTLKVDGPTAN+LIAA+LLLATPFF+ F Sbjct: 242 NLKIVILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGPTANILIAASLLLATPFFVIF 301 Query: 304 GSLSDKIGRKPIILGGCLIAAVTYFPIFNGLTHFANPALEAALQKSPVIVTADPASCQFQ 363 GSLSDKIGRKPII+ GCLIAA+TYFPIFN LTH+ANPALEAAL+ +PV+VTADPA+CQFQ Sbjct: 302 GSLSDKIGRKPIIMAGCLIAALTYFPIFNALTHYANPALEAALKNAPVVVTADPAACQFQ 361 Query: 364 FNPTGTKKFTSSCDIVKAKLSAASVNYQNVAGAPGSVATVKIGERIITSYDATGLSKEEA 423 FNPTGTKKFTSSCDIVKAKL+AASV Y N A G+VATVK+G+ ++TSYDA GLSKEEA Sbjct: 362 FNPTGTKKFTSSCDIVKAKLAAASVGYSNEAAPAGTVATVKVGDTLLTSYDAKGLSKEEA 421 Query: 424 AAKDKELSKALADDIKAAGYPAKADPEQINKPMVLLLLFILVIYVTMVYGPIAACLVEMF 483 AKDK SK L+D IKA GYP KADP QIN M LLLLFILVIYVTMVYGPIAA LVEMF Sbjct: 422 TAKDKAFSKELSDAIKAHGYPTKADPNQINYGMTLLLLFILVIYVTMVYGPIAAMLVEMF 481 Query: 484 PTRIRYTSMSMPYHIGNGWFGGLLPTTSFALVAFKGDIYYGLWYPIVIALITFVIGMLFV 543 PTRIRYTSMS+PYHIGNGWFGGLLPTT+FALVAFKGDIYYGLWYPI+IALITFVIGM+FV Sbjct: 482 PTRIRYTSMSLPYHIGNGWFGGLLPTTAFALVAFKGDIYYGLWYPIIIALITFVIGMIFV 541 Query: 544 KETVRNNIH 552 +ET N+I+ Sbjct: 542 RETKDNDIY 550 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 469 bits (1207), Expect = e-133, Method: Compositional matrix adjust. Identities = 251/553 (45%), Positives = 354/553 (64%), Gaps = 23/553 (4%) Query: 1 MTTASVNTTTRGI--TKEEKKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTA 58 MT AS+ +T + KEE++V+ AS+LGT+FEWYDF++YGSLA ++ F +P A Sbjct: 1 MTAASITSTEADVFTAKEERQVVLASTLGTIFEWYDFFIYGSLAIFMSSVLFPPDNPTAA 60 Query: 59 FIFALLAFAAGFIVRPFGALVFGRLGDLVGRKYTFLVTILIMGASTFIVGVLPNYNSIGI 118 + +L A AAGF++RP GA++FG LGD +GRK+TFL+TI++MG ST ++G LP+Y S+G Sbjct: 61 LLASLGALAAGFVIRPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGH 120 Query: 119 TAPIILIILRILQGLALGGEYGGAATYVAEHAPEGRRGSFTAWIQTTATMGLFLSLLVIL 178 A I L++LR++QGLA+GGEYGGA YVAEH+ RRG T WIQ T++MGL LS+ VIL Sbjct: 121 AAWISLVVLRLVQGLAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVIL 180 Query: 179 GVRTSVGEAAFADWGWRIPFLVSILLLAISVWIRMSMNESPAFLKMKAEGKTSKAPLTEA 238 G + ++ A+F +WGWR+PF++SI +L SV++R ++ESP F ++KA+G+ SK P+ + Sbjct: 181 GTQATMDMASFKEWGWRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQGRLSKNPVRDT 240 Query: 239 FGQWKNLKLVILALVGLTAGQAVVWYTGQFYALFFLTQTLKVDGPTANLLIAAALLLATP 298 F +W +LK+++LAL G+TAGQ ++TGQFY + FL Q + +D T LI L+ P Sbjct: 241 FFKWPSLKMILLALFGVTAGQGATYFTGQFYVMIFLQQAVMLDQRTVYTLICIGFLIGAP 300 Query: 299 FFLFFGSLSDKIGRKPIILGGCLIAAVTYFPIFNGLTHFANPALEAALQKSPVIVTAD-- 356 F+FFG LSD++GRK I++ G IAA+ Y P+F L NPAL AA +PV V A+ Sbjct: 301 AFVFFGWLSDRLGRKWIMMAGLFIAALCYRPMFASLLEAGNPALAAATLSTPVTVHANAK 360 Query: 357 PASCQFQFNP---TGTKKFTSSCDIVKAKLSAASVNYQNVAGAPGSVATVKIGERIITSY 413 +C F + C K L +N++ G + + + I + Sbjct: 361 DGACSFSIGASFVSAHPDHAKPCVQAKKMLVGNGINFEYAEPIAGQAVAMSVKGQTINGF 420 Query: 414 DATGLSKEEAAAKDKELSKALADDIKAAGYPAKADPEQINKPMVLLLLFILVIYVTMVYG 473 DA KA + AGYPAKADPEQ+NK +LLLL ++ + V MVYG Sbjct: 421 DA----------------KAYRAALTEAGYPAKADPEQVNKGRILLLLVLMTVVVAMVYG 464 Query: 474 PIAACLVEMFPTRIRYTSMSMPYHIGNGWFGGLLPTTSFALVAFKGDIYYGLWYPIVIAL 533 P+AA LVE+FP IRYT++S PYHIG G FGG LP + L G+I+ GLWYP+VI Sbjct: 465 PVAAYLVELFPPNIRYTALSFPYHIGAGIFGGFLPFCATYLALAGGNIFAGLWYPVVITA 524 Query: 534 ITFVIGMLFVKET 546 +T +IG L + T Sbjct: 525 VTGIIGSLLLPNT 537 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 209 bits (532), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 137/334 (41%), Positives = 194/334 (58%), Gaps = 10/334 (2%) Query: 2 TTASVNTTTRGITKEEKKVI-FASSLGTVFEWYDFYLYGSLAAII-AKQFFAGTDPNTAF 59 T+ V+ +RG+ K + I ASS+GT+ EWYDF +YG AA++ K FF P Sbjct: 5 TSGDVSVASRGVKKSKIGTIAAASSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSPVIGT 64 Query: 60 IFALLAFAAGFIVRPFGALVFGRLGDLVGRKYTFLVTILIMGASTFIVGVLPNYNSIGIT 119 + AL +A GF RP G +FG GD VGRK L+T+ IMG T ++G LP Y IGI Sbjct: 65 LAALGTYAVGFFARPLGGAIFGHFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIW 124 Query: 120 APIILIILRILQGLALGGEYGGAATYVAEHAPEGRRGSFTAWIQTTATMGLFLSLLVILG 179 AP++LI+LR +QG+ LGGE+GGAA V EHAP+ RRG + + +Q +GL L+ V Sbjct: 125 APVLLIVLRFIQGVGLGGEWGGAALMVLEHAPKHRRGFYGSLVQVGFPLGLVLATGV-FA 183 Query: 180 VRTSVGEAAFADWGWRIPFLVSILLLAISVWIRMSMNESPAFLKMKAEGKTSKAPLTEAF 239 + + + EA F WGWRIPFL+SI+L+ + IR + ESP FL+MKA+ + SK P+ +A Sbjct: 184 IVSKLPEADFLSWGWRIPFLLSIVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPVLDAI 243 Query: 240 GQWKNLKLVILALVGLTAGQAVVWYTGQFYALFFLTQTLKVDGPTANLL--IAAALLLAT 297 KN + L +GL + Y + + T L++ P + +L I A L+ Sbjct: 244 --LKNPR-AFLTAIGLKISEVSWVYILTVFIVVHATNNLQL--PKSLILDGILYAALVEV 298 Query: 298 PFFLFFGSLSDKIGRKPIILGGCLIAAVTYFPIF 331 FG LSDK+GR+P+ + G L FP+F Sbjct: 299 ITIPLFGLLSDKVGRRPMYIWGALFTVALAFPLF 332 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 202 bits (515), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/334 (39%), Positives = 198/334 (59%), Gaps = 13/334 (3%) Query: 2 TTASVNTTTRGITKEEKKVIFASSLGTVFEWYDFYLYGSLAAII-AKQFFAGTDPNTAFI 60 T ++VN R ++ + V+FAS++GT+ EWYDF +YG AA++ K FF DP + Sbjct: 8 TASTVN--PRAEKQKIRSVVFASAIGTIIEWYDFLIYGMAAALVFNKLFFPNIDPLLGTL 65 Query: 61 FALLAFAAGFIVRPFGALVFGRLGDLVGRKYTFLVTILIMGASTFIVGVLPNYNSIGITA 120 AL ++A GF+ RP G +FG GD +GRK ++T+ +MG TF++G+LP Y IGI A Sbjct: 66 AALGSYAVGFLARPLGGAIFGHYGDRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIWA 125 Query: 121 PIILIILRILQGLALGGEYGGAATYVAEHAPEGRRGSFTAWIQTTATMGLFLSLLVILGV 180 PI+LI LRI+QG+ LGGE+GGAA V EH+P+ RRG + + +Q +GL ++ LV V Sbjct: 126 PILLITLRIIQGIGLGGEWGGAAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIATLVFSFV 185 Query: 181 RTSVGEAAFADWGWRIPFLVSILLLAISVWIRMSMNESPAFLKMKAEGKTSKAPLTEAFG 240 + + EA WGWRIPFL+S +L+ + ++IR ++ ESP F MK SK+P+ + Sbjct: 186 -SKMPEADILSWGWRIPFLLSAVLIIVGIFIRKNVEESPVFEDMKMRKALSKSPVMDVI- 243 Query: 241 QWKNLKLVILALVGLTAGQAVVWYTGQFYALFFLTQTLKVDGPTANLLIAAALLLATPFF 300 K+ + +A +GL + Y + + + T TL G +L++ A L+ A Sbjct: 244 -LKHPRTFFIA-IGLKISEVSWVYMLTVFMVVYATTTL---GLPKSLILEAILIAAMVEI 298 Query: 301 L---FFGSLSDKIGRKPIILGGCLIAAVTYFPIF 331 + FG LSD IGR+P+ G L FP+F Sbjct: 299 VTIPLFGYLSDVIGRRPLYFIGALFTIAFAFPLF 332 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 143 bits (361), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 137/236 (58%), Gaps = 6/236 (2%) Query: 16 EEKK-----VIFASSLGTVFEWYDFYLYGSLAAII-AKQFFAGTDPNTAFIFALLAFAAG 69 EKK V+FAS +GT E++DFY+Y + A ++ FF ++P + +L FA Sbjct: 8 SEKKNSPATVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSNPTAGMLQSLATFAIA 67 Query: 70 FIVRPFGALVFGRLGDLVGRKYTFLVTILIMGASTFIVGVLPNYNSIGITAPIILIILRI 129 F RP G+ VFG GD +GRK T + +L MG ST ++G+LP Y +IG AP++L + R Sbjct: 68 FFARPVGSAVFGHYGDRIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLLLALCRF 127 Query: 130 LQGLALGGEYGGAATYVAEHAPEGRRGSFTAWIQTTATMGLFLSLLVILGVRTSVGEAAF 189 QGL LGGE+GGA E+AP G+ + + Q A +G FLS + L + ++ F Sbjct: 128 GQGLGLGGEWGGAVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSETLTNEQF 187 Query: 190 ADWGWRIPFLVSILLLAISVWIRMSMNESPAFLKMKAEGKTSKAPLTEAFGQWKNL 245 +GWRIPF+ S +L+ + +++R+ + E+P F K+ + + K P+ F + + Sbjct: 188 FSYGWRIPFIASAVLVLVGLYVRLKITETPVFQKVLDKNERVKVPIATIFREHSRV 243 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,107,957 Number of extensions: 40274 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 7 Length of query: 553 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 465 Effective length of database: 895,685 Effective search space: 416493525 Effective search space used: 416493525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)