BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2076.p (329 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980792|ref|YP_001354199.1| LysR family transcriptional reg... 126 1e-30 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 120 9e-29 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 115 4e-27 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 112 2e-26 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 94 1e-20 >gi|152980792|ref|YP_001354199.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 126 bits (317), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 138/243 (56%), Gaps = 3/243 (1%) Query: 4 NISTRLLQAFLALADCRHFGHAAERCHVSQSAFSAMIQKLEAATGARLFERDTRNVSLTP 63 N++ R L+AF+A+A+ F AAER H++QSA S +I++LE +LF+R TR V LT Sbjct: 2 NLTLRQLRAFVAVAELSQFTLAAERLHITQSALSMLIRELEKELELKLFDRHTRMVRLTE 61 Query: 64 EGELFVQVARQLVTDIEAALADMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPG 123 GE F+ AR++++++E A+ + V ++GRVA+A LA L P + ++ QR+PG Sbjct: 62 HGEEFLLTARRVLSELEVAVMQSRESVNYKRGRVAVACSTVLAVTLLTPFMREFAQRHPG 121 Query: 124 VTVELFDAISDHCLDLLRQGKADIAL-TAAGPNLVEFDTRALCSDPFYLVCRQDHKLAGK 182 + + L D + L G D ++ T P E + SD F L+ + H L + Sbjct: 122 IKLMLRDVAEESIKKRLLNGDVDFSVGTQLNPE-SEISELPIFSDHFVLLMPKGHPLTKQ 180 Query: 183 RRIKVAQLAGCEMIHLARSTSVRQHLDAVL-RPGGVIHTGLEVEHLATVAALIESGLGVS 241 RI + ++ +I +A S+S+R L+A L R ++ E +T+ A++ +G+G++ Sbjct: 181 TRIPLQAISQYPVIAMAPSSSIRAVLEAHLKRLDITLNIAYEASFPSTIIAMVRNGMGIT 240 Query: 242 VVP 244 ++P Sbjct: 241 ILP 243 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 120 bits (302), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 147/287 (51%), Gaps = 5/287 (1%) Query: 4 NISTRLLQAFLALADCRHFGHAAERCHVSQSAFSAMIQKLEAATGARLFERDTRNVSLTP 63 NI+ R L+AF+ +A+ F AAE VSQS+ S +++ LE G RLF+R TR + LT Sbjct: 2 NITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELTD 61 Query: 64 EGELFVQVARQLVTDIEAALADMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPG 123 G + VA++ + D+ + + + D +A +KGRV IAA AA +P +L + +RYPG Sbjct: 62 AGHDLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAATVIPDLLKSFNRRYPG 121 Query: 124 VTVELFDAISDHCLDLLRQGKAD--IALTAAGPNLVEFDTRALCSDPFYLVCRQDHKLAG 181 + V + D +L+ G D I +T G N + + D + ++ ++H+L Sbjct: 122 IRVIVEDVAERQVRELIVAGTVDVGIGMTLDGDN--SMLAQVIGRDKYAVLMHKEHQLMR 179 Query: 182 KRRIKVAQLAGCEMIHLARSTSVRQHLDAVL-RPGGVIHTGLEVEHLATVAALIESGLGV 240 K+ I +A + I L + +R +LD L R G + EV T+ ++ +G+GV Sbjct: 180 KKTITWQDIAATQPILLKPPSLIRTYLDQHLARVGITLTPAYEVALPWTMTGMVRAGVGV 239 Query: 241 SVVPELTLFQFRLPKLVAIPLEAPELRRPLLIVTPKERSLSMAAQGL 287 ++V L L + AP + R L ++T LS AAQ L Sbjct: 240 AIVTTGVLPVAERMGLELRTISAPVIERELAVLTRAGYPLSPAAQSL 286 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 141/293 (48%), Gaps = 14/293 (4%) Query: 8 RLLQAFLALADCRHFGHAAERCHVSQSAFSAMIQKLEAATGARLFERDTRNVSLTPEGEL 67 R L+ FLA A + F A+E H++Q S I+++E G +LF+R R V LT GEL Sbjct: 4 RHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTAGEL 63 Query: 68 FVQVARQLVTDIEAALADMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPGVTVE 127 F A++ + +++A L +++ + GRV L S LPP+LAD+ + YPG+ + Sbjct: 64 FQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGIKIT 123 Query: 128 LFDAISDHCLDLLRQGKADIALTAAGPNLVEFDTRALCSDPFYLVCRQDHKLAGKRRIKV 187 + S + L G + A + + + L + P LV H L G I + Sbjct: 124 VLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGSAGITL 183 Query: 188 AQLAGCEMIHLARSTSVRQHLDAVLRPGGVI-HTGLEVEHLATVAALIESG-----LGVS 241 +L E++ L+ + R+ +DA+L G+ +E+ + + A + L + Sbjct: 184 NELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATVRHSSLATILSAN 243 Query: 242 VVPELTLFQFRLPKLVAIPLEAPELRRPLLIVTPKERSLSMAAQGLLELVRQK 294 +V E +P L +PL P + + + T + LS AA+ L++ +RQ+ Sbjct: 244 LVDE-------MPGLHQVPL-TPTVTHTVGLFTRRNSHLSAAARALVDTIRQR 288 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 136/253 (53%), Gaps = 15/253 (5%) Query: 4 NISTRLLQAFLALADCRHFGHAAERCHVSQSAFSAMIQKLEAATGARLFERDTRNVSLTP 63 NI R L+ F+ +A+ HFG AA R H++Q S IQ LEA G +LF R +R+V+LTP Sbjct: 2 NIELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTP 61 Query: 64 EGELFVQVARQLVTDIEAALADMSDYVAR-RKGRVAIAALPSLAAGWLPPVLADYRQRYP 122 G + A++++ AAL D+ A GR+++A + + LP L ++R+ YP Sbjct: 62 AGIALLPEAQRILQQ-TAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYP 120 Query: 123 GVTVELFDAISDHCLDLLRQGKADIALTAAGPNL-----VEFDTRALCSDPFYLVCRQDH 177 V ++L +A +D LD L QG+ D+ L P L ++ D + S+P L + Sbjct: 121 QVEIDLREATTDVQLDELAQGRIDVGLLI--PPLPDKAKLQLDYLPVLSEPLILAVPKGL 178 Query: 178 K-LAGKRRIKVAQLAGCEMIHLARSTSVRQHLDAVL---RPGGVI-HTGLEVEHLATVAA 232 K + GK+ + + +A +I R + H DA+L R G+ H G E + T+ Sbjct: 179 KAVRGKQTVALQAVAELPLIIFPRRIAPAFH-DAILACYRDAGLTPHIGQEAIQMQTIIG 237 Query: 233 LIESGLGVSVVPE 245 L+ +G+G+++VP+ Sbjct: 238 LVSAGMGIALVPQ 250 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 93.6 bits (231), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 129/293 (44%), Gaps = 13/293 (4%) Query: 10 LQAFLALADCRHFGHAAERCHVSQSAFSAMIQKLEAATGARLFERDTRNVSLTPEGELFV 69 L+ +A+A +HFGHAAE C V+Q S I+KLE G LFER +S+TP G V Sbjct: 22 LKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGAQIV 81 Query: 70 QVARQLVTDIEAALADMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPGVTVELF 129 A +++ A G + + ++A LPP++ +R P + + L Sbjct: 82 AQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQMPLVLQ 141 Query: 130 DAISDHCLDLLRQGKADIALTAAGPNLVEFDTRALCSDPFYLVCRQDHKLAGKRRIKVAQ 189 + + L+LLRQG+ D A+ A + + +PF + + HK A + + Sbjct: 142 ENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHHKWANRDSVSTDD 201 Query: 190 LAGCEMIHLARSTSVRQHLDAVL-------RPGGVIHTGLEVEHLATVAALIESGLGVSV 242 L M+ L R + V G I E L T+ ++ SG+G++V Sbjct: 202 LKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVASGIGITV 261 Query: 243 VPELTL--FQFRLPKLVAIPLEAPELRRPLLIVTPKERSLSMAAQGLLELVRQ 293 +P+ ++ Q + L IP P R +++V K S +E VRQ Sbjct: 262 LPQASIPDMQAKDGMLRYIPFTQPGPSRRVVLVWRK----SFTRGAAIEAVRQ 310 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 702,682 Number of extensions: 26717 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 41 Length of query: 329 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 245 Effective length of database: 910,473 Effective search space: 223065885 Effective search space used: 223065885 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)