BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2071.p (534 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979896|ref|YP_001353687.1| L-aspartate oxidase [Janthinoba... 872 0.0 gi|152980484|ref|YP_001353198.1| succinate dehydrogenase flavopr... 241 8e-65 >gi|152979896|ref|YP_001353687.1| L-aspartate oxidase [Janthinobacterium sp. Marseille] Length = 534 Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/536 (78%), Positives = 475/536 (88%), Gaps = 5/536 (0%) Query: 1 MKCDVAILGSGLAGLSVALHLAEKYQVVVVSKGELLDGASNWAQGGIAAVLDSSDSHAQH 60 MK DVAI+GSGLAGLSVALHLAE +V V+SK LLDGAS+WAQGGIAAVLDS DS +H Sbjct: 1 MKFDVAIVGSGLAGLSVALHLAETRKVAVISKRALLDGASSWAQGGIAAVLDSHDSVDEH 60 Query: 61 IDDTLVAGAGLCDESATRTIVEHGRQAIEWLIAQGVPFTRDDSAELGYHLTREGGHSQRR 120 + DTLVAG GLCDE+ATR IVEHGR+AIEWLI QGVPFT D +AELG+HLTREGGH QRR Sbjct: 61 VADTLVAGGGLCDEAATRFIVEHGREAIEWLIKQGVPFTPDPTAELGFHLTREGGHGQRR 120 Query: 121 IIHAADATGHAVQVTLEQRVRAHPNITLLEHHCAIDLIHARKLDPKAE-PRCLGVHVQDT 179 IIHAADATGHAVQVTLEQ+VRAHPNITLLEHH AID+I A KLD K PRCLG++VQD Sbjct: 121 IIHAADATGHAVQVTLEQKVRAHPNITLLEHHYAIDVITADKLDQKKNGPRCLGLYVQDV 180 Query: 180 ASGRVIAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTC 239 SG+VI IAA TVLATGGAGKVYLYT+NPD+ATGDGIAMAWRAGCR+ANMEFIQFHPTC Sbjct: 181 KSGKVITIAAEHTVLATGGAGKVYLYTTNPDTATGDGIAMAWRAGCRIANMEFIQFHPTC 240 Query: 240 LYHPYAKSFLISEALRGEGALLKLPASAGAAAGQRFMPEHDERCELAPRDIVARAIDFEM 299 LYHPYAKSFLI+EA+RGEG +LKLPASAG G+RFMP HDER ELAPRDIVARAID EM Sbjct: 241 LYHPYAKSFLITEAVRGEGGVLKLPASAGRDGGKRFMPAHDERAELAPRDIVARAIDAEM 300 Query: 300 KKRGLDHVDLDISHQSPAFIAEHFPTIQARCLEFGIDITRQPIPVVPAAHYTCGGVVTDM 359 KKRGLD+VDLDIS +SP F+ EHFPTI ARCLE GID+T+QPIPVVPAAHYTCGG++TD+ Sbjct: 301 KKRGLDYVDLDISDKSPEFLKEHFPTIMARCLELGIDMTKQPIPVVPAAHYTCGGIITDL 360 Query: 360 AGRTDLPGLYAVGETAYTGLHGANRLASNSLLECLVLGRSAAADIEQELAAGTWRVTEVP 419 +GRTDLPGLYAVGE YTGLHGANRLASNSLLECLVLGR+ A I+++ +++ +P Sbjct: 361 SGRTDLPGLYAVGEATYTGLHGANRLASNSLLECLVLGRATAKYIDEQ---PKQKLSTLP 417 Query: 420 QWDESRVSDADEEVVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYYAN 479 WDESRV+DADEEV+IA+NWDELRRFMWNYV IVRT KRLERAQHRIRLLKEEIDEYYAN Sbjct: 418 NWDESRVTDADEEVIIANNWDELRRFMWNYVGIVRTTKRLERAQHRIRLLKEEIDEYYAN 477 Query: 480 FRISRDLLELRNLVDVAQLIVSSALTRKESRGLHFSQDYPRTLPRATPTIL-PGRQ 534 FRI+ DLLELRNLV+VA LIV+SAL+R+ESRGLH+S+DYP TLP+A P++L P R+ Sbjct: 478 FRITPDLLELRNLVEVASLIVNSALSRRESRGLHYSRDYPDTLPKALPSVLSPDRK 533 >gi|152980484|ref|YP_001353198.1| succinate dehydrogenase flavoprotein subunit [Janthinobacterium sp. Marseille] Length = 592 Score = 241 bits (615), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 190/560 (33%), Positives = 281/560 (50%), Gaps = 65/560 (11%) Query: 4 DVAILGSGLAGLSVALHLAEK-YQVVVVSKGELLDGASNWAQGGIAAVLDS--SDSHAQH 60 D I+G+G +G+ +L LAE V V+SK + AQGGI A L + D+ H Sbjct: 14 DAIIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMAEDNWYWH 73 Query: 61 IDDTLVAGAGLCDESATRTIVEHGRQAIEWLIAQGVPFTRDDSAEL-----GYHLTREGG 115 + DT+ L D+ A + + + L G+PF R+ + G H G Sbjct: 74 MFDTVKGSDYLGDQDAIEFMCREAPKVVYELEHFGMPFDRNSDGTIYQRPFGGHTANFGE 133 Query: 116 HSQRRIIHAADATGHAVQVTLEQR-VRAHPNITLLEHHCAIDLIHARKLDPKAEPRCLGV 174 +R AAD TGHA+ TL QR VRA + + AIDL+ A+ +GV Sbjct: 134 KPVQRACAAADRTGHALLHTLYQRNVRARTHFFV--EWMAIDLMR------DADGDVIGV 185 Query: 175 HVQDTASGRVIAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQ 234 + +G V+ + A T+ ATGGAG+++ ++N TGDG+ MA RAG + +MEF Q Sbjct: 186 VALEMETGDVMMLEAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLEDMEFWQ 245 Query: 235 FHPTCLYHPYAKSFLISEALRGEGALLKLPASAGAAAGQRFMPEHDERC-ELAPRDIVAR 293 FHPT + LI+E +RGEG +L + G+RFM + +LAPRD V+R Sbjct: 246 FHPTGV---AGAGVLITEGVRGEGGILV------NSQGERFMERYAPTLKDLAPRDFVSR 296 Query: 294 AIDFEMKK-RGL----DHVDLDISHQSPAFIAEHFPTIQARCLEF-GIDITRQPIPVVPA 347 ++D E+K+ RG DHV LD+ H I + P+I +F +D TR+PIPVVP Sbjct: 297 SMDQEIKEGRGCGPLKDHVMLDLRHIGAETIQKRLPSILEIAHKFANVDATREPIPVVPT 356 Query: 348 AHYTCGGVVTDMAGRTDLP----------GLYAVGETAYTGLHGANRLASNSLLECLVLG 397 HY GG+ T++ G+ P GLYA+GE A +HGANRL +NSLL+ LV G Sbjct: 357 IHYQMGGIPTNIHGQVVEPKNGNPNHVVNGLYAIGECACVSVHGANRLGTNSLLDLLVFG 416 Query: 398 RSAAADIEQE-----------LAAGTWRVTEVPQWDESRVSDADEEVVIAHNWDELRRFM 446 R+A I Q A ++ + + S + ++V +++R M Sbjct: 417 RAAGNHIVQSHLKQREHKPLPADAADLALSRLAHLENSTGGERVQDVA-----NDIRSTM 471 Query: 447 WNYVSIVRTDKRLERAQHRIRLLKE-----EIDEYYANFRISR-DLLELRNLVDVAQLIV 500 Y + RTD+ L+ +I L E + F +R + LEL NL++ A+ + Sbjct: 472 QQYCGVFRTDELLQTGYKKIMELDERRKHVSFKDKSRVFNTARIEALELDNLIETAKATI 531 Query: 501 SSALTRKESRGLHFSQDYPR 520 +SA RKESRG H +D+ + Sbjct: 532 TSAAARKESRGAHAHRDFEK 551 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,252,526 Number of extensions: 53486 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 2 Length of query: 534 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 446 Effective length of database: 895,685 Effective search space: 399475510 Effective search space used: 399475510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)