BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2059.p
         (530 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980120|ref|YP_001353722.1| GMP synthase [Janthinobacterium...   952   0.0  

>gi|152980120|ref|YP_001353722.1| GMP synthase [Janthinobacterium
           sp. Marseille]
          Length = 539

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/539 (86%), Positives = 495/539 (91%), Gaps = 15/539 (2%)

Query: 6   HSKILILDFGSQVTQLIARRVREAGVFSEVFPHDVTDEFVRNYGAAGVILSGGPNSVTEG 65
           HSKILILDFGSQVTQLIARRVR++GVFSEVFP+DV+DEFVRNYGAAGVILSGGPNSV EG
Sbjct: 2   HSKILILDFGSQVTQLIARRVRDSGVFSEVFPYDVSDEFVRNYGAAGVILSGGPNSVIEG 61

Query: 66  D-TPRAPQAVFELGVPVLGICYGMQTMAEQLGGKVENGHLREFGYAEVRAHGHTKLLDNI 124
           D +PR PQAVFELGVPV+GICYGMQ MAEQLGGKVENG +REFGYAEVRAHGHT LL +I
Sbjct: 62  DESPRVPQAVFELGVPVMGICYGMQAMAEQLGGKVENGKVREFGYAEVRAHGHTALLKDI 121

Query: 125 SDFTNAQGHGMLKVWMSHGDKVNDMPAGFKLMASTGNCPIAGMADEERRFYGVQFHPEVT 184
           SDFT  +GHGMLKVWMSHGDKVN+MP GFKLMAST NCPIAGMADEERR Y  QFHPEVT
Sbjct: 122 SDFTTPEGHGMLKVWMSHGDKVNEMPPGFKLMASTPNCPIAGMADEERRMYAFQFHPEVT 181

Query: 185 HTVQGKAMLGRFVHEICGCQSDWNMPDYIAEAVEMIRQQVGSDEVILGLSGGVDSSVAAA 244
           HTVQGKA++ RFVH+ICGC+SDWNMPDYIAEAVE IRQQVGSDEVILGLSGGVDSSVAAA
Sbjct: 182 HTVQGKAIIARFVHDICGCKSDWNMPDYIAEAVEKIRQQVGSDEVILGLSGGVDSSVAAA 241

Query: 245 LIHRAIGDQLTCVFVDHGLLRLDEGKMVMEMFAKNLGVKVIHVDATEQFMGHLAGVTDPE 304
           LIHRAIGDQLTCVFVDHGLLRLDEGKMVMEMFA++LGV VIH+DA +QFMGHLAGV+DPE
Sbjct: 242 LIHRAIGDQLTCVFVDHGLLRLDEGKMVMEMFAESLGVNVIHIDAVDQFMGHLAGVSDPE 301

Query: 305 AKRKIIGREFVEVFQAESAKLTSAKWLAQGTIYPDVIESAGKGKKTAHTIKSHHNVGGLP 364
           AKRKIIGREFVEVFQ E+ K  +AKWLAQGTIYPDVIESAGKGKK  HTIKSHHNVGGLP
Sbjct: 302 AKRKIIGREFVEVFQVEAGKRKNAKWLAQGTIYPDVIESAGKGKK-GHTIKSHHNVGGLP 360

Query: 365 ETLNLKLLEPLRELFKDEVRELGVALGLPPEMVYRHPFPGPGLGVRILGEVKKEYADLLR 424
           ETLNL+LLEPLRELFKDEVR+LGVALGLP +MVYRHPFPGPGLGVRILGEVKKE+ADLLR
Sbjct: 361 ETLNLQLLEPLRELFKDEVRKLGVALGLPHDMVYRHPFPGPGLGVRILGEVKKEFADLLR 420

Query: 425 RADAIFIEELRNT----------KDEDG---QTWYEKTSQAFAVFLPVKSVGVMGDGRTY 471
           RADAIFIEELR T            ++G   + WY+ TSQAFAVFLPVKSVGVMGDGRTY
Sbjct: 421 RADAIFIEELRKTPFVATPGASEATDNGIPHRNWYDATSQAFAVFLPVKSVGVMGDGRTY 480

Query: 472 EYVVALRAVQTQDFMTAHWAHLPHELLGRVSNRIINEVRGLNRVVYDISGKPPATIEWE 530
           EYVVALRAVQTQDFMTAHWAHLPHELLG VSNRIINEVRG+NRVVYDISGKPPATIEWE
Sbjct: 481 EYVVALRAVQTQDFMTAHWAHLPHELLGNVSNRIINEVRGINRVVYDISGKPPATIEWE 539


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,307,759
Number of extensions: 56799
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 442
Effective length of database: 895,685
Effective search space: 395892770
Effective search space used: 395892770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)