BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2057.p
         (101 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981834|ref|YP_001353726.1| hypothetical protein mma_2036 [...   117   1e-28

>gi|152981834|ref|YP_001353726.1| hypothetical protein mma_2036
           [Janthinobacterium sp. Marseille]
          Length = 105

 Score =  117 bits (293), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 73/97 (75%), Gaps = 1/97 (1%)

Query: 1   MADPAE-LQVQLCYAAPGLQILVDLQVEQGCTIQQVILQSGLLRQEPTIDLSVCKVGIFG 59
           MAD A  + +Q+CYA P  Q L++  V  G TIQQ I  SG+++Q P ID+SV +VGI+G
Sbjct: 4   MADLASTIHIQICYARPDRQFLLEQTVTSGTTIQQAIQNSGIIQQAPEIDVSVWRVGIYG 63

Query: 60  KVKTLETPVRERDRIEIYRPLIADPKQSRRRRAAHQE 96
           K+KTL+T +RE DR+EIYRPLIADPK SRR+RA H+ 
Sbjct: 64  KLKTLDTVLREHDRVEIYRPLIADPKDSRRKRADHKN 100


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 224,565
Number of extensions: 7646
Number of successful extensions: 15
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 1,221,021
Length adjustment: 69
Effective length of query: 32
Effective length of database: 965,928
Effective search space: 30909696
Effective search space used: 30909696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 122 (51.6 bits)