BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2055.p
         (149 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980762|ref|YP_001353728.1| SsrA-binding protein [Janthinob...   248   8e-68
gi|152981401|ref|YP_001353576.1| SsrA-binding protein [Janthinob...   228   1e-61

>gi|152980762|ref|YP_001353728.1| SsrA-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 149

 Score =  248 bits (634), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 131/149 (87%)

Query: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60
           MSI+DN+KAF DYFIEERFEAG+VLQGWE KSIRAGRVQLKEAYVIVRN E++LFG HIS
Sbjct: 1   MSIVDNRKAFHDYFIEERFEAGVVLQGWEAKSIRAGRVQLKEAYVIVRNDEIFLFGSHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRVKCDIGLAK 120
            L + STH+ P+  RTRKLLL + EI KL  KVERSGYTLVPLNLHY +G +KC+IGLAK
Sbjct: 61  PLATASTHITPDPVRTRKLLLKSEEIKKLSAKVERSGYTLVPLNLHYQRGYIKCEIGLAK 120

Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149
           GKKQHDKR+TEKQRD+QREIQ+ MKQ+RR
Sbjct: 121 GKKQHDKRDTEKQRDTQREIQSVMKQNRR 149


>gi|152981401|ref|YP_001353576.1| SsrA-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 149

 Score =  228 bits (581), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 126/149 (84%)

Query: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60
           MSI+DN+KAF DYFIE+R+EAG++LQGWEVK+IRAGRVQLKEAYVI R  E++LFG H+S
Sbjct: 1   MSIVDNRKAFHDYFIEDRYEAGVMLQGWEVKAIRAGRVQLKEAYVIARGNEIFLFGAHVS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRVKCDIGLAK 120
           AL S S+  HPE  RTRKLLL+AAEI KL+ KV++SG+T+VPLNLH+ +GRVKCDI LAK
Sbjct: 61  ALNSASSFSHPEAVRTRKLLLHAAEIKKLLSKVDQSGFTMVPLNLHWVRGRVKCDIALAK 120

Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149
           GKK++DKR TEK RD  RE Q  MK HRR
Sbjct: 121 GKKEYDKRNTEKDRDWMREHQKIMKIHRR 149


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 310,806
Number of extensions: 10867
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 2
Length of query: 149
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 74
Effective length of database: 943,746
Effective search space: 69837204
Effective search space used: 69837204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)