BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2053.p (229 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981180|ref|YP_001353103.1| osmolarity response regulator [... 151 4e-38 gi|152981303|ref|YP_001354918.1| transcriptional regulatory prot... 147 6e-37 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 131 3e-32 gi|152981360|ref|YP_001351713.1| two-components system response ... 126 1e-30 gi|152981322|ref|YP_001355016.1| two components system response ... 125 2e-30 >gi|152981180|ref|YP_001353103.1| osmolarity response regulator [Janthinobacterium sp. Marseille] Length = 248 Score = 151 bits (381), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 88/214 (41%), Positives = 125/214 (58%), Gaps = 4/214 (1%) Query: 20 YLEQEKFEVNVAYDGEAGAAEALSGQYAIAVLDVMMPRLNGVDTLRRIR-AKSNMPVVML 78 YL ++ F V A + +A L +Y + VLD+M+P +G+ RR+R A P++ML Sbjct: 31 YLSEQGFNVVTAENAQAMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIML 90 Query: 79 TAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRASAETSEQAPY---SPLAVG 135 TAKG+D DRI+GLE+GADDY+ KP PRE+ ARI A+LRR E AP G Sbjct: 91 TAKGEDVDRIVGLEMGADDYLAKPFNPRELVARISAVLRRVGPEEIPGAPSETPQSFTFG 150 Query: 136 ALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQILSEQGLGRPLARFDRNI 195 + R + + LT+ EF++L+V AR+A +P+S++ L E GR FDR++ Sbjct: 151 EFVLDLGTRTLKKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVFDRSL 210 Query: 196 DVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 DV +S +R+ I S IQTV+ LGY FI E Sbjct: 211 DVQISRLRKLIEPDPSTPLYIQTVWGLGYVFIPE 244 >gi|152981303|ref|YP_001354918.1| transcriptional regulatory protein OmpR [Janthinobacterium sp. Marseille] Length = 233 Score = 147 bits (371), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 94/233 (40%), Positives = 132/233 (56%), Gaps = 14/233 (6%) Query: 6 LIDDDVELVEMLKEYLEQEKFEVNVAYDGEAG----AAEALSGQYAIAVLDVMMPRLNGV 61 +I+DD L M+ YL Q FEV + G A + +AI +LD+M+P +G+ Sbjct: 1 MIEDDQRLASMVATYLNQNGFEVTHSGTASEGLQQLQQAAATQAFAIVLLDLMLPDADGL 60 Query: 62 DTLRRIRAKS----NMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILR 117 D R+IR ++ +MP+VMLTAKGD DR++GLELGADDY+PKP PRE+ AR+RA+LR Sbjct: 61 DVCRQIRGQTQPLASMPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 118 RAS--AETSEQAPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVS 175 R A +E+ L G L + + R + +TS +FNLL +A AG+ +S Sbjct: 121 RQQGVATNNERV----LRFGRLEIDLDARVIRLDDQEKPVTSYQFNLLAAMADRAGRVLS 176 Query: 176 KQILSEQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIK 228 ++ L + G PL FDR+IDVH+ +R I I TV GY F K Sbjct: 177 REQLMDVVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFAK 229 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 131 bits (330), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 10/224 (4%) Query: 3 KVLLIDDDVELVEMLKEYLEQEKFEVNVAYDGEAGAAEALSGQYAIAVLDVMMPRLNGVD 62 K+LL++D+V+ E L++ L + F V+ A DG G AL Y + +LDVM+P L+G Sbjct: 2 KILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGWQ 61 Query: 63 TLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRASAE 122 LR +R + PV+ LTA+ + DR+ GLELGADDY+ KP + E+ AR+R +LRR Sbjct: 62 LLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGPVR 121 Query: 123 TSEQAPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQILSEQ 182 S + + + + +RR T +G L+LT+ EF+LL +LA+ G+ +S+ +++ Q Sbjct: 122 ESSLIEIADMQIDVM-----KRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQ 176 Query: 183 GLGRPLARFDRNIDVHLSSIRQKIAALG--SDKSCIQTVYRLGY 224 FD + +V +IR+ A L + IQTV +GY Sbjct: 177 VWD---MNFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGY 217 >gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 126 bits (317), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 10/224 (4%) Query: 3 KVLLIDDDVELVEMLKEYLEQEKFEVNVAYDGEAGAAEALSGQYAIAVLDVMMPRLNGVD 62 K+LLI+D+V+ V L+ L ++ V+VA +G G AL+G Y VLD+M+P +G++ Sbjct: 2 KILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLPGRDGIE 61 Query: 63 TLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRASAE 122 L+ +R + + PV+MLTA+G+ DRI GL+ GADDY+ KP + E+ AR++A+ RR + Sbjct: 62 VLQALRRQKSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGRPQ 121 Query: 123 TSEQAPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQILSEQ 182 S + L + ++ RRA R L+LT+ EF LL LAR+ G+ +SK ++ E Sbjct: 122 ESTHIRIADLHIDLIA-----RRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEM 176 Query: 183 GLGRPLARFDRNIDVHLSSIRQKIAALG--SDKSCIQTVYRLGY 224 F+ N +V +I++ A L S+ + T+ +GY Sbjct: 177 VWD---VNFESNTNVVEVAIKRLRAKLDEPSEVKLLHTIRGMGY 217 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 125 bits (315), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 128/232 (55%), Gaps = 10/232 (4%) Query: 3 KVLLIDDDVELVEMLKEYLEQEKFEVNVAYDGEAGAAEALSGQYAIAVLDVMMPRLNGVD 62 +L++DDD E+ E+L YLE+ ++A +G G + VLD+M+P +G+ Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 63 TLRRIRAKS--NMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRR-- 118 R +RA +PV+MLTA+ ++TDRIIGLE+GADDY+ KP RE+ ARIR++LRR Sbjct: 66 LCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 Query: 119 ---ASAETSEQAPYSPLAVGALSMWPEQRR-ATWSGRPLELTSSEFNLLEVLARNAGKPV 174 A+ + SE A + L G + R G + L+ +E+ LL V + + + Sbjct: 126 MLPANLQVSEPAQF--LVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVL 183 Query: 175 SKQILSEQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQF 226 ++ L GR FDR+ID+ +S +RQ++ + I+T+ GY F Sbjct: 184 TRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVF 235 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 472,515 Number of extensions: 17818 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 32 Length of query: 229 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 149 Effective length of database: 925,261 Effective search space: 137863889 Effective search space used: 137863889 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)