BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2052.p (473 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 116 3e-27 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 107 2e-24 gi|152982747|ref|YP_001353102.1| two-component sensor kinase Env... 102 7e-23 gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 94 3e-20 gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 92 7e-20 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 132/245 (53%), Gaps = 19/245 (7%) Query: 217 NDELADLGRDFDAMTAKLRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLEL 276 DE+ L F+ A++ L+++Q+ LL + SHELRSP+AR++MA+ L + ++ Sbjct: 199 KDEVGRLATSFNRSAARIEALVDAQKALLANASHELRSPLARIRMAVELMAADAQPEMRN 258 Query: 277 TLERIERESVRMDKLVGELLTLSRLEANVPGS-MEEPIAIQAMLADMTNDASFEAEALGK 335 L+R E +D+L+ E+L SRL+A + + EPI + A++A+ Sbjct: 259 ELKRNIGE---LDQLIDEILLASRLDATADATQVFEPIDLTALVAEEC-----------A 304 Query: 336 RVESHIDCR-VQVKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEFNKLLHLSILD 394 R+++ ++ + V++ G+ LL R + N+L NA ++ TA+ E NK++ L + D Sbjct: 305 RIDAQLETQSVEIPGDARLLRRMVRNLLENARRY-GNGTAIDVSLE-KTGNKVV-LQVCD 361 Query: 395 RGPGVPEEELNSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQGFIHAANRNDGGLRV 454 GPGVP E +IF F+R G GLGLS+ ++I AH G + R GG Sbjct: 362 GGPGVPVAERENIFAPFYRLPGASEREGGVGLGLSLVQQIARAHGGEVVCTGREGGGSCF 421 Query: 455 DITLP 459 +TLP Sbjct: 422 KVTLP 426 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 156/311 (50%), Gaps = 26/311 (8%) Query: 162 FFPTMPIAVALVASLVFALLLAW----YFSHPIRHLKNAFNQAANGNLDLALEPVMNARN 217 F T+ L+ S V AL++AW + PIR + + LD+ L+P Sbjct: 178 MFKTILWWATLIVS-VIALIVAWCAVQWGHRPIRKVSRDIRAIRSSRLDVRLDP--TEVP 234 Query: 218 DELADLGRDFDAMTAKLRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLEL- 276 ELA+L F+ M ++ D++HELR+P+ L M +A Q + E Sbjct: 235 IELAELAASFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLVMQTEVALSQSRSSAEYR 294 Query: 277 -----TLERIERESVRMDKLVGELLTLSRLEANVPGSME-EPIAIQAMLADMTNDASFEA 330 LE E RM +++ ++L L++ E N P ++ I+I AM+ D+ + FEA Sbjct: 295 EILYSNLEEFE----RMSRMISDMLFLAQTE-NDPHNLHLSDISIAAMIQDLFD--YFEA 347 Query: 331 EALGKRVESHIDCRVQ-VKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEFNKLLH 389 A + ++ VK + E++ RA+ N++ NAI+++AP + V + + + ++ Sbjct: 348 LAEEANITLTLEGNAAPVKADREMMLRALSNLISNAIQYSAPGSTV--IVHLSQDKQVTT 405 Query: 390 LSILDRGPGVPEEELNSIFELFFRSSRT-KSNSAGHGLGLSIARRIVEAHQGFIHAANRN 448 +S+ + + E+L +F+ FFR+ + K ++G GLGL+I + I EAH G + A + Sbjct: 406 VSVENPAGQIAREDLPKLFDRFFRTDPSRKRKASGAGLGLAIVKSIAEAHGGTVQATSEQ 465 Query: 449 DGGLRVDITLP 459 ++ +ITLP Sbjct: 466 -AQIKFEITLP 475 >gi|152982747|ref|YP_001353102.1| two-component sensor kinase EnvZ [Janthinobacterium sp. Marseille] Length = 455 Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 119/470 (25%), Positives = 210/470 (44%), Gaps = 56/470 (11%) Query: 4 LFWKFFFIAIAQITATFGVGVLFW--VENLERSNRNAEIDSSPPASFMIRAAAATLQFGG 61 LFW+ FF+ I A+ V + VE R+N+ A S ++ A L Sbjct: 15 LFWRTFFLLAFLIAASMAAWVASYRIVEQTPRANQIAAQVIS-----VVTITRAALTHSA 69 Query: 62 PEALRSLI-----NEGRPHRMQLYAVNEENQDL---MGREVPQHLVEQARHLLTTENERR 113 P+ R L+ NEG +++Y + EEN + + + Q + E R L + R Sbjct: 70 PDLRRELLFDLASNEG----IRVYPL-EENDRIEPPIQNGMMQTIQEHVRSGLGQDT--R 122 Query: 114 VVELVKAANGHSYLMFIQLPTDEFGRPPDDGILQHEARYMKRHGVKPLFFPTMPIAVALV 173 V G + + + DE+ ++ R GV+ L + AV ++ Sbjct: 123 FARAVNDVAG--FWVSFTISDDEYW------LMLDRDRIEGSSGVQWLGWG----AVTVL 170 Query: 174 ASLVFALLLAWYFSHPIRHLKNAFNQAANGNLDLALEPVMNARNDELADLGRDFDAMTAK 233 SL+ AL+++ + P+ L A A G P+ E+ + F+ M Sbjct: 171 LSLLGALMISGLINQPLARLTAATRAIATGQRP---APLPERGPTEIREANHSFNQMVDD 227 Query: 234 LRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLELTLERIERESVRMDKLVG 293 L + + +L +SH+LR+P+AR+Q+ + LA + + + + + +MD ++G Sbjct: 228 LNRVESDRAVVLAGISHDLRTPLARMQLEVELAGLPADARAGM-----QSDLEQMDAIIG 282 Query: 294 ELLTLSRLEANVPGSMEEPIAIQAMLADMTNDASFEAEALGKRVESHIDCRVQVKGNPEL 353 + L ++ + S +PI + A++ +A + R+ S ID ++ V GN Sbjct: 283 QFLDYAKPSDS---SHFQPIDMTALMHSAAQEALRMQDV---RINSKIDDKLVVLGNAID 336 Query: 354 LYRAIENVLRNAIKHTAPETAVQFVAEID-----EFNKLLHLSILDRGPGVPEEELNSIF 408 + R + N++ NA ++ + EID E +K++ + + D G GVPE E++ + Sbjct: 337 IKRVVNNLIENARRYG--KLPGNDYVEIDLRCQAEGDKVI-IEVTDHGAGVPEAEIDRLL 393 Query: 409 ELFFRSSRTKSNSAGHGLGLSIARRIVEAHQGFIHAANRNDGGLRVDITL 458 F R + + G GLGL+I RIV+ H G + NR GGL + ITL Sbjct: 394 RPFTRMDSARGQANGAGLGLAIVDRIVKRHSGKLQLLNREGGGLVIHITL 443 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 15/259 (5%) Query: 218 DELADLGRDFDAMTAKLRTLMESQRRLLHDVSHELRSPIARLQMAIGLA-RVQDKDKLEL 276 +E+ L + M +L ++ Q+R + D +H++++P+A ++M LA R D+ ++ Sbjct: 284 EEILPLVGSLNEMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELALRQTDQVEIHK 343 Query: 277 TLERIERESVRMDKLVGELLTLSRLEANVPGSME-EPIAIQAMLADMTNDASFEAEALGK 335 +LE++ + S +++ +LL L+R E P + +P+ + + D + + + K Sbjct: 344 SLEQLAKSSKSATRMINQLLALARAENQTPTTRPLQPLELSELARDTVQE--WVQTSFNK 401 Query: 336 RVE---SHIDCRVQVKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEFNKLLHLSI 392 +++ D + V G+ +L + N++ NA+ +T DE +L +L + Sbjct: 402 KIDLGFEQPDYHIMVNGDAIMLRELLNNLIDNALNYTPAGGHATVRVRADEEARLAYLEV 461 Query: 393 LDRGPGVPEEELNSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQGFI------HAAN 446 D GPG+ E IFE F+R SN G GLGL+I R I + H I + N Sbjct: 462 EDTGPGIAPHEHKRIFERFYRI--LGSNVEGSGLGLAIVREIAQQHGAEIDILNNPNCTN 519 Query: 447 RNDGGLRVDITLPFMADEP 465 G + ITLP P Sbjct: 520 PKAPGCLMRITLPLEQPAP 538 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 24/236 (10%) Query: 238 MESQR---RLLHDVSHELRSPIARLQMAIGLARVQDKDKLELTLERIE------RESVRM 288 MES+R LL +SH+LR+P+ L +GL+ + K EL + E E++RM Sbjct: 665 MESERLRNSLLAAISHDLRTPLTAL---VGLSESLTRSKPELAAAQQELAHALHEEALRM 721 Query: 289 DKLVGELLTLSRLEANVPGSMEEPIAIQAMLADMTNDASFEA-EALGKRVESHIDCRVQ- 346 LV LL ++R++ S E + +Q + +S A ++L R + H Sbjct: 722 GNLVTNLLDMARIQ-----SGEVKLNLQWQQFEEVVGSSLRAVQSLLGRHQVHTRLAPGL 776 Query: 347 --VKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEFNKLLHLSILDRGPGVPEEEL 404 V + L+ R + N+L NA K+T + + AE+ + L +++ D GPG+P + Sbjct: 777 PLVNFDAVLIERVLCNLLENASKYTPAGSQITIAAELS--GQYLDVAVYDNGPGLPPGQE 834 Query: 405 NSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQGFIHAANRNDGGLRVDITLPF 460 +IFE F R R +S + G GLGL+I R I+EAH G I + GG + TLP Sbjct: 835 EAIFEKFTRGER-ESATPGVGLGLAICRAIIEAHHGTIRGGHSPQGGAAIIFTLPL 889 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,041,724 Number of extensions: 41544 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 28 Length of query: 473 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 386 Effective length of database: 899,382 Effective search space: 347161452 Effective search space used: 347161452 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)