BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2049.p
         (144 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982309|ref|YP_001353730.1| hypothetical protein mma_2040 [...   112   1e-26

>gi|152982309|ref|YP_001353730.1| hypothetical protein mma_2040
           [Janthinobacterium sp. Marseille]
          Length = 151

 Score =  112 bits (279), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 91/142 (64%), Gaps = 1/142 (0%)

Query: 1   MTDWSLWLVLAGGLLGAELFTGSFYLLMIALGLVAGAIAAWCGLMLEWQLLVAAVVGVAA 60
           MTDW +W  +A  L+  E+ TG+FYLLMI +G  AG +AA  G+ +  Q L+AA V   A
Sbjct: 1   MTDWMIWFAVACVLVILEMATGTFYLLMIGIGTAAGGLAALGGMGVPEQCLIAAAVAAFA 60

Query: 61  VLGLRHSPYGRLRRSSANDDPNVLLDIGQSIEVPAW-QAHGQQYLARVPYRGAQWDVELL 119
              LR S +GR   + A  DPNV LDIGQ++EV  W Q +   Y ARV YRGA WDVEL 
Sbjct: 61  TFALRRSKFGRPDHTDAARDPNVNLDIGQTLEVGEWHQINASSYTARVMYRGALWDVELA 120

Query: 120 PGHHALPGSYVIREIRGSRLLV 141
                +PG ++IRE++GSRL+V
Sbjct: 121 ESESPVPGKFIIREVQGSRLIV 142


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 260,294
Number of extensions: 8638
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 69
Effective length of database: 943,746
Effective search space: 65118474
Effective search space used: 65118474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)