BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2047.p
         (280 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980961|ref|YP_001353732.1| hypothetical protein mma_2042 [...   473   e-135

>gi|152980961|ref|YP_001353732.1| hypothetical protein mma_2042
           [Janthinobacterium sp. Marseille]
          Length = 282

 Score =  473 bits (1217), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 221/268 (82%), Positives = 251/268 (93%)

Query: 11  AANRTVFFVSDGTGITAETFGHSVLSQFELRFKQVRLPFIDTLEKAHDATRKINEAYSVD 70
           A+ RTVFFVSDGTGITAETFGHSVL+QFELRFKQVRLPFIDT +KA+DA RKINE ++ D
Sbjct: 10  ASTRTVFFVSDGTGITAETFGHSVLTQFELRFKQVRLPFIDTPDKAYDALRKINETFAAD 69

Query: 71  GKLPIVFSTLVKSELSSVIRRAKAMHMDLFQTFVEPLEQELEMKSTHTIGRSHNTTDSEE 130
           G+ PI+FSTLVK++LSS++R+++ MHMDL QTFVEPLEQEL +KSTHTIGRSH +TDSEE
Sbjct: 70  GQRPIIFSTLVKADLSSIVRQSQGMHMDLIQTFVEPLEQELGVKSTHTIGRSHTSTDSEE 129

Query: 131 YRNRIEAINFSLAHDDGQSNKNLSEADVILVGVSRSGKTPTSLYLAMQFGIKCANYPLIP 190
           Y+NRIEAINFSLAHDDGQS+KNLS ADVILVGVSRSGKTPTSL+LAMQ+GIK ANYPLIP
Sbjct: 130 YKNRIEAINFSLAHDDGQSHKNLSAADVILVGVSRSGKTPTSLFLAMQYGIKAANYPLIP 189

Query: 191 EDFEREKLPSGLVMHKKKIFGLTIAAERLSEVRNERRPGSKYAALENCRYEINEAEKMMR 250
           +DFEREKLP GL  +K KIFGL+IAA+RL+E+RNER PGSKYAALENCRYE+NEAE+MMR
Sbjct: 190 DDFEREKLPGGLQAYKHKIFGLSIAADRLAEIRNERLPGSKYAALENCRYEVNEAERMMR 249

Query: 251 REGIRWMSSTTKSIEEIAATILQEIKLE 278
           REGIRWMSSTTKSIEEIAATILQEIKL+
Sbjct: 250 REGIRWMSSTTKSIEEIAATILQEIKLD 277


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 594,735
Number of extensions: 22210
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 198
Effective length of database: 917,867
Effective search space: 181737666
Effective search space used: 181737666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)