BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2045.p
         (263 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981475|ref|YP_001353733.1| RNA methyltransferase [Janthino...   330   4e-92
gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthino...    81   6e-17

>gi|152981475|ref|YP_001353733.1| RNA methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 264

 Score =  330 bits (847), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 160/260 (61%), Positives = 200/260 (76%)

Query: 1   MKLITSKDNPVFKDLKQLATSSQARRRAGQSLLDGVHLAQAWLQHRGAPQVCVVAESAQY 60
           +K I+S+DNP++K+LK LA SSQARR+AG++LLDGVHL +A+LQ  G P +C+V E+A  
Sbjct: 3   IKSISSRDNPLYKELKHLAASSQARRKAGRTLLDGVHLCEAYLQKVGLPPLCIVGETAML 62

Query: 61  HPEVAPILAQCEALHAQCLVLADRLYDAISTVENGVGLLLLVTTPEPAAPTSLKESAVLL 120
           + EV  I+ QC     QC+VL D L+ A+S VE+GV LL ++ TPE   P  L +SAVLL
Sbjct: 63  NGEVTVIVQQCSDSTTQCIVLPDALFHALSQVEHGVDLLFVIDTPEMPTPPRLTQSAVLL 122

Query: 121 DGLQDPGNLGSILRSAAAAGVKQVFCSPGTAAAWSPKVLRAGMGAHFVLDIFENADLVAL 180
           D +QDPGN GSI+RSAAAAG+KQVFCS GT  AWSPKVLRAGMGAHF+L+IFE  DL  L
Sbjct: 123 DKVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAGMGAHFLLEIFEGVDLSDL 182

Query: 181 CAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQDAATHEVVIPHLGEME 240
              + IP++ATSSHA + +Y+ DL  PVAWL GHEGQGV+  L   ATH + IPHLG++E
Sbjct: 183 LGRADIPVIATSSHAEKQLYELDLRQPVAWLFGHEGQGVADDLLARATHRISIPHLGDIE 242

Query: 241 SLNVAAAAAVCLFEQLRQRT 260
           SLNVAA++AVC FEQLRQRT
Sbjct: 243 SLNVAASSAVCFFEQLRQRT 262


>gi|152981297|ref|YP_001353804.1| RNA methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 247

 Score = 81.3 bits (199), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 118 VLLDGLQDPGNLGSILRSAAAAGVKQVFCSPGTAAAWSPKVLRAGMGAHFVLDIFENADL 177
           ++LDG+ DP NLG+ LR A  AG   V      A   +    +   GA   +      +L
Sbjct: 98  LVLDGITDPHNLGACLRVADGAGAHAVIAPKDRAVGLNATAAKVASGAADTVPYITVTNL 157

Query: 178 VALCAASR---IPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQDAATHEVVIP 234
                  +   I L+ T+  + + +Y+ D SGP A ++G EG+G+    ++     V IP
Sbjct: 158 ARTLRELKERDIMLIGTTDDSEKGLYEADFSGPAALVMGSEGEGMRRLTRETCDVLVGIP 217

Query: 235 HLGEMESLNVAAAAAVCLFEQLRQR 259
             G +ESLNV+ A+ VCL+E  RQR
Sbjct: 218 MFGSVESLNVSVASGVCLYEARRQR 242


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 622,363
Number of extensions: 25127
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 182
Effective length of database: 921,564
Effective search space: 167724648
Effective search space used: 167724648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)