BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2044.p
         (210 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980735|ref|YP_001353734.1| ribonuclease HII [Janthinobacte...   310   4e-86

>gi|152980735|ref|YP_001353734.1| ribonuclease HII
           [Janthinobacterium sp. Marseille]
          Length = 210

 Score =  310 bits (795), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/206 (74%), Positives = 172/206 (83%), Gaps = 1/206 (0%)

Query: 1   MPKAAPQTLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLSEA 60
           M K  P  L+LF     +IICGVDEAGRGPLAGPVFAAAVILDP RP+ GLRDSKKL+E 
Sbjct: 1   MKKEDP-NLSLFSFLDEDIICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLRDSKKLTEV 59

Query: 61  ARDSLALEIKESALAWAIASCNEQEIDELNILHASMLAMRRAVESLSTLPTLALIDGNRC 120
            RD+LA+EIK+ AL+W+IA C+E+EID LNIL A+MLAMRRA+E L  +PTLALIDGNRC
Sbjct: 60  KRDALAIEIKQYALSWSIAQCSEEEIDSLNILQATMLAMRRAIEGLHVVPTLALIDGNRC 119

Query: 121 PVMSIRSEAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLE 180
           PV S+RSEAI+KGDDKV AISAASILAKTARD AL +LH  YPHY FD+HKGYPT LHLE
Sbjct: 120 PVTSVRSEAIIKGDDKVQAISAASILAKTARDHALGLLHIQYPHYAFDQHKGYPTALHLE 179

Query: 181 MLRLHGVSPVHRRSYAPVRALLSAQT 206
            LR HGVSPVHR+SYAPVRALL   T
Sbjct: 180 RLREHGVSPVHRKSYAPVRALLGGVT 205


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 473,505
Number of extensions: 17745
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 131
Effective length of database: 928,958
Effective search space: 121693498
Effective search space used: 121693498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)