BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2040.p
         (362 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980152|ref|YP_001353738.1| UDP-3-O-[3-hydroxymyristoyl] gl...   459   e-130
gi|152980337|ref|YP_001353736.1| UDP-N-acetylglucosamine acyltra...    56   3e-09

>gi|152980152|ref|YP_001353738.1| UDP-3-O-[3-hydroxymyristoyl]
           glucosamine N-acyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 350

 Score =  459 bits (1180), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/345 (70%), Positives = 274/345 (79%), Gaps = 1/345 (0%)

Query: 1   MSIRLQQLVERLGGQLKGDATIAVQGIAPLDAAGASHITFLSNPKFRAQAEATQAAALIL 60
           MS RL +LVERLGG+L GDA I V GIAPL+ A ASHITFLSNPKFR QA  T AAALIL
Sbjct: 1   MSTRLGELVERLGGRLIGDADIEVVGIAPLNDADASHITFLSNPKFRGQAAQTHAAALIL 60

Query: 61  SEADDAQVQG-YAGARIVTRNPYAYFARAAQLFQAEAEVRAPAGIHASAVVDPSAQVAAD 119
           S ADD  V   Y GARIVT NPYAYFARAAQ F A     APAGIH SA VDP+AQ+AA 
Sbjct: 61  SAADDEVVAADYQGARIVTANPYAYFARAAQFFAALHAHIAPAGIHPSASVDPTAQIAAS 120

Query: 120 AVIGPLVVIEAGAVIGARARIDAGSFIGHHAKVGEDTHFHARATLHHACEIGARGIVHSG 179
           A IGP V +EAGAVI     IDAG FIG  A+VG  THF+ R T    C IGARGI+HSG
Sbjct: 121 ASIGPFVAVEAGAVIEDGCVIDAGCFIGRDARVGSGTHFYPRVTFLAGCRIGARGIIHSG 180

Query: 180 AVIGADGFGFANEAGQWIKIPQVGRVMIGDDVEIGANTTIDRGALADTVIEEGVKLDNQI 239
           AVIGADGFGFANE G +IKIPQ G V IGDDVEIGANT+IDRGALADTV+E+GVKLDNQI
Sbjct: 181 AVIGADGFGFANEGGVYIKIPQTGAVRIGDDVEIGANTSIDRGALADTVLEDGVKLDNQI 240

Query: 240 QIAHNCHIGAHTAIAACAGIAGSAKIGKYCSIGGAAMIHGHITIVDKVHVSAGTLALRSI 299
           QI HNCHIGAHTA+A C G+AGSA IGKYC+ GGAAM+ GH+TI D VH+S+G++  RSI
Sbjct: 241 QIGHNCHIGAHTAMAGCVGVAGSAIIGKYCTFGGAAMVLGHLTIADHVHISSGSMVSRSI 300

Query: 300 LEPGQYTGFYPITEHRDWEKSAALVRNLGTMREKIRALEKSLKTL 344
            EPGQYTGFYP+ ++ +WEKSA +VRNL TMREKIR LEK++K+L
Sbjct: 301 REPGQYTGFYPLAKNAEWEKSAVIVRNLATMREKIRELEKTIKSL 345


>gi|152980337|ref|YP_001353736.1| UDP-N-acetylglucosamine
           acyltransferase [Janthinobacterium sp. Marseille]
          Length = 262

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 79/179 (44%), Gaps = 30/179 (16%)

Query: 104 IHASAVVDPSAQVAADAVIGPLVVIEAGAVIGARARIDAGSFIGHHAKVGEDTHFHARAT 163
           IH +A+VDP AQ+ +   +GP  VI    VIG      AGS IG H  V   T       
Sbjct: 4   IHPTAIVDPKAQLDSSVEVGPYTVIGPDVVIG------AGSKIGPHVVVEGHT------- 50

Query: 164 LHHACEIGARGIVHSGAVIGADGFGFANEAGQWIKIPQVGRVMIGDDVEIGANTTIDRGA 223
                 IGA   +   A IGA     A +  ++   P +  + IGD   I    TI+ G 
Sbjct: 51  -----TIGADNKIFQFASIGA-----APQDKKYAGEPTL--LTIGDRNTIREFVTINLGT 98

Query: 224 LADTVIEEGVKLDNQI----QIAHNCHIGAHTAIAACAGIAGSAKIGKYCSIGGAAMIH 278
             D  I   +  DN I     IAH+C +G++  +A  A +AG   +  +  +GG   +H
Sbjct: 99  SQDVGITR-LGNDNWIMAYVHIAHDCQLGSNIILANNATLAGHVHLEDWVFLGGFTSVH 156


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 762,288
Number of extensions: 30179
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 278
Effective length of database: 910,473
Effective search space: 253111494
Effective search space used: 253111494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)