BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2038.p
         (793 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981040|ref|YP_001353740.1| outer membrane protein [Janthin...  1141   0.0  

>gi|152981040|ref|YP_001353740.1| outer membrane protein
           [Janthinobacterium sp. Marseille]
          Length = 799

 Score = 1141 bits (2952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/805 (69%), Positives = 655/805 (81%), Gaps = 18/805 (2%)

Query: 1   MKLHPAQHPIPTFSRRLIAAAAFALCSSQAMAITPFVVKDIRVEGIQRTEAGTVFSYLPV 60
           MK +   + +P F RRLIA AAFALCS  A A  PF VKDIRVEGIQRTEAGTVFSYLPV
Sbjct: 1   MKFNSESYSLPVFPRRLIAIAAFALCSGYAHAADPFTVKDIRVEGIQRTEAGTVFSYLPV 60

Query: 61  RVGDTFNDEKATAAIKALYATGFFRDVRIEAEGEVLVVQVVERPAIASVDFSGIKEFDKE 120
           RVG+TF D+K  AAIKALYATGFF+DVRIE EG+VLVV V ERPAIASV+F+G KEF+K+
Sbjct: 61  RVGETFTDDKGAAAIKALYATGFFKDVRIEVEGDVLVVFVEERPAIASVEFTGTKEFEKD 120

Query: 121 QLTKALKEIGVAESRIFDRSQVDRAEQELKRQYLSRGLYGAKVTTTVTPVERNRVAITFS 180
           QLTKALKEIGV ESRIFD++ VDRAEQELKRQYLSRGLYG ++TTTVTP+ERNRVA+TF+
Sbjct: 121 QLTKALKEIGVGESRIFDKALVDRAEQELKRQYLSRGLYGVQITTTVTPLERNRVAVTFA 180

Query: 181 VDEGEVSRIKQINFVGNKVFSDSTLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIETLRS 240
           VDEG+VSRIK IN +GNK FS+  L   + L TPGWFTWY+KADQYSK+KL GDIE L+S
Sbjct: 181 VDEGDVSRIKNINIIGNKAFSEKELISLLTLRTPGWFTWYSKADQYSKQKLAGDIEALKS 240

Query: 241 YYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEGEKYTVSGVKLEGEMFGMEPELAKLV 300
           +YL+RGY+EMQ+ESTQVSITPDKKDI+IT+NIKEGEK+TVS +KLEGEM G E EL  L+
Sbjct: 241 FYLNRGYIEMQIESTQVSITPDKKDIFITINIKEGEKFTVSDIKLEGEMLGREAELTSLL 300

Query: 301 QLKAGDVYSGAKLTESTKKIGERLGNFGYAFANVNANPNVDREKKEVSFTIMVDPGKRVY 360
           QLK GDV+SG KLT STK I +RLGNFGYAFANVNANP +DREKKEV+FT+M+DPGKRVY
Sbjct: 301 QLKKGDVFSGEKLTASTKNISDRLGNFGYAFANVNANPQIDREKKEVAFTVMIDPGKRVY 360

Query: 361 VRHVNIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTVDTPEVPGT 420
           VR++NI+GNTKTRDEVIRRE RQFE+SWYDGEKIKLSRDR+DRL YF +VTV+TP+V G 
Sbjct: 361 VRNINISGNTKTRDEVIRREMRQFENSWYDGEKIKLSRDRIDRLDYFNDVTVETPDVVGK 420

Query: 421 SDQVDVNMKVEEKPTGNIMVGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRT 480
           +DQVDVN+ V EKPTGNIM+GAGFS +DKLSL+G ++Q NAFGSGNTVG+++NTS   RT
Sbjct: 421 TDQVDVNIGVTEKPTGNIMLGAGFSSADKLSLSGGVNQANAFGSGNTVGVNVNTSRLNRT 480

Query: 481 ISVSTTNPYFTDDGISRTYEVYLRTIRPSVYTTGDYRVKTLGGSIKFGVPFSELDRVFFG 540
           I++S+TNPYFTDDGISR+YEV+LRT RP    TGDYR++T+G +IKFGVPF+E D VFFG
Sbjct: 481 IALSSTNPYFTDDGISRSYEVFLRTTRPPTINTGDYRIRTMGANIKFGVPFTEYDTVFFG 540

Query: 541 IGVENTDVSTDS------TSPSLYRQYVRDFGGAGSAGCDVTDVSSTATCGIGSARTTSI 594
            GVE T+V T +       SP +Y++YV    G  + G    D +S    G   A  ++I
Sbjct: 541 AGVEQTEVQTYTGLTNYNDSPDVYKRYVDSINGVTNPG----DPNSAFQTGQHDASASAI 596

Query: 595 PLTVAWQRDGRDSALVPTSGRYQRANLEVSYLGTLKYYRASYQHQYFQPFFSKAVTLALN 654
           PLT AWQRD RDSALVPT GRYQRAN E+S  G   YYRA+YQ QYFQP F+ + TLALN
Sbjct: 597 PLTAAWQRDNRDSALVPTRGRYQRANFEISPAGDSNYYRATYQTQYFQPLFNGSTTLALN 656

Query: 655 GEVDYGRGIGGKPYPVFKNYYAGGIGTVRGYEASSLGNLKDQYGDSMGGASRLYGNVELQ 714
           GEV+YG+ +GGK YP+FKN+Y GGIG+VRGYE+SSLG  K   GD +GG++RL  N ELQ
Sbjct: 657 GEVNYGKALGGKVYPIFKNFYGGGIGSVRGYESSSLGP-KALNGDPLGGSARLIFNAELQ 715

Query: 715 FPFPGSGQDRTLRWFTFFDGGNVFADGENIKLNDLRYSAGVGISWVSPIGPLKLSFGKPL 774
            PFPGSG DR+LRWFTFFD GNV+AD        L+ S G+G+SWVSPIGPLKLSFGKPL
Sbjct: 716 MPFPGSGLDRSLRWFTFFDAGNVYAD-GFGGGGGLKTSVGIGLSWVSPIGPLKLSFGKPL 774

Query: 775 NL------KTGDKSQTFQFQLGTGF 793
           N       +  D++Q FQFQLGTGF
Sbjct: 775 NAVSEGTPQERDRTQAFQFQLGTGF 799


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,873,029
Number of extensions: 82967
Number of successful extensions: 245
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 1
Length of query: 793
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 702
Effective length of database: 884,594
Effective search space: 620984988
Effective search space used: 620984988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)