BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2037.p
         (457 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981722|ref|YP_001353741.1| membrane-associated Zn-dependen...   625   e-180

>gi|152981722|ref|YP_001353741.1| membrane-associated Zn-dependent
           protease [Janthinobacterium sp. Marseille]
          Length = 455

 Score =  625 bits (1612), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 306/456 (67%), Positives = 371/456 (81%), Gaps = 4/456 (0%)

Query: 1   MNLLHTLIAFFVALGTLVVVHELGHYLVARWCGVKVLRFSVGMGRVIWSRRFGRDQTEWA 60
           M LL T++AF V LG LV+VHELGHYLVARWCGVKVLRFSVGMG+VI+SRRFG DQTEWA
Sbjct: 1   MMLLQTILAFAVVLGVLVIVHELGHYLVARWCGVKVLRFSVGMGKVIYSRRFGADQTEWA 60

Query: 61  ISVLPLGGYVKMLDAREQPLEDIPAADLKREFTRQSVWRRIAIVAAGPLANFLLAILLFA 120
           +SVLPLGGYVKMLDAR+  L DI  AD+KREFTRQSVWRRIAIVAAGPLANFLLAIL+FA
Sbjct: 61  VSVLPLGGYVKMLDARDDDLGDISPADMKREFTRQSVWRRIAIVAAGPLANFLLAILVFA 120

Query: 121 GLYMHGVPEPVPVLRGATEQSAAYQAGLRAGDRITAINGAPVQVWSEVRWKLMQLVLEKA 180
           GLY +G+PEP P LR   E+S AY+AGLR  + +T++NG PVQ+W+++RW+++Q V+ K 
Sbjct: 121 GLYSYGIPEPAPKLRAPAEKSVAYEAGLRGNELVTSVNGEPVQIWNDLRWQMVQSVINKQ 180

Query: 181 DARIDVERPNPAG-NGKLLDTVTLRLGGIDGNELEGDFLAKLGLALARPPAILGQIL-DG 238
             R++VERP P   + K + TVTL +  I  NELEGDFL KLG+ LARPPAILGQ++ DG
Sbjct: 181 PVRLEVERPVPGSPDAKNIQTVTLPVDSISANELEGDFLGKLGIDLARPPAILGQVVADG 240

Query: 239 PAKAAGLQTGDRITAIDGVPVQDGLAFVEKIRESAGKPLVLQGLRGTMPLQVRITPDTVE 298
           PA  AGLQ GDR+ +++G  + DGL+ VE +R S GK L +  LR   P+ +R+ P+ V 
Sbjct: 241 PAMKAGLQQGDRVVSVNGATIADGLSLVELVRASPGKVLNVDVLRNGQPVSLRVVPEEVN 300

Query: 299 EGESGKRIGRIKVEVPLAPEMATISDAPFTAVAKGAQRTWDTSVMTIKMIGKMIVGQVSL 358
               G+  GRIKVEVP+AP+M     + F A+ KG Q+TWDTSV+TIKM+GKMI+G+VS 
Sbjct: 301 --ADGQVFGRIKVEVPMAPDMVVAHHSLFAALLKGVQKTWDTSVLTIKMVGKMIIGEVSW 358

Query: 359 KNITGPITIADYAGQTARVGLVSYLSFLAFISISLGVMNLLPIPVLDGGHLLYYALEILT 418
           KN+TGPITIADYAGQTAR+GL+SYLSF+AF+SISLGVMNLLPIPVLDGG LLYYA+E+LT
Sbjct: 359 KNVTGPITIADYAGQTARIGLISYLSFIAFVSISLGVMNLLPIPVLDGGLLLYYAVEVLT 418

Query: 419 GRPVSERFGEIAQRAGLGLLMALMLVAAFNDIVRLM 454
           GRPVSERFG IAQRAG+G+LM LMLVA FNDI RL+
Sbjct: 419 GRPVSERFGAIAQRAGIGILMTLMLVAVFNDINRLI 454


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,078,952
Number of extensions: 47552
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 371
Effective length of database: 903,079
Effective search space: 335042309
Effective search space used: 335042309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)