BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2036.p
         (390 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980021|ref|YP_001353742.1| 1-deoxy-D-xylulose 5-phosphate ...   575   e-165

>gi|152980021|ref|YP_001353742.1| 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase [Janthinobacterium sp. Marseille]
          Length = 390

 Score =  575 bits (1482), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/388 (73%), Positives = 326/388 (84%)

Query: 1   MQSISILGATGSIGVSTLDVVARHPDRYRVFALSAHARVVELAEQCQRFRPQVAVVGSAQ 60
           MQ I+ILG+TGS+GVSTLDV+ARHPDRY V+AL+A ++V ELA+QC RF+PQVAVVGSA+
Sbjct: 1   MQQITILGSTGSVGVSTLDVIARHPDRYSVYALTAQSKVEELAQQCARFKPQVAVVGSAE 60

Query: 61  AASQLQTLLRAAGLSTEVTYGPQALCDVASADGCDMVMAAIVGAAGLASTLAAARAGKKI 120
           AA +LQ LL A GL T+V YG  ALC VASA  CD VMAAIVGAAGLA TLAAAR+GK++
Sbjct: 61  AAKKLQVLLDAQGLHTQVGYGEAALCAVASAPECDSVMAAIVGAAGLAPTLAAARSGKRV 120

Query: 121 LLANKEALVISGQLLMDTVQAHGASLLPIDSEHNAIFQCLPAGYTRSMPAHGVEKILLTA 180
           LLANKEALV+SG LLM+ V A GA L+PIDSEHNAIFQC+PA   R+  AHGVEKILLTA
Sbjct: 121 LLANKEALVMSGPLLMEAVAASGAILMPIDSEHNAIFQCMPATCQRTPLAHGVEKILLTA 180

Query: 181 SGGPFLTRDVATFDQVTVEEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAPADK 240
           SGGPFL RDV T DQV+ +EAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLF  PA++
Sbjct: 181 SGGPFLKRDVNTLDQVSWQEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFDLPAER 240

Query: 241 IEVVIHPQSVIHSMVSYADGSVLAQLGNPDMRTPIANALAYPERIASGVAPLELAQIAQL 300
           IEVVIHPQSV+HSMVSY DGSVLAQLGNPDMRTPIA+ALAYPERI+SGV P++L QIAQL
Sbjct: 241 IEVVIHPQSVVHSMVSYVDGSVLAQLGNPDMRTPIAHALAYPERISSGVPPIDLIQIAQL 300

Query: 301 SFFPPDFTRFPCLKLAYDALRAGGTLAAILNAANEVAVQAFLDRRIGFGKIAPLIQEVMS 360
           SF  PDF RFPCLKLAYDAL+AGG+  AI+NAANE+AVQAFLD RIGF  I  LI  VM 
Sbjct: 301 SFERPDFLRFPCLKLAYDALQAGGSAPAIMNAANEIAVQAFLDSRIGFRAIDQLIARVMD 360

Query: 361 AIPNRQADDIAALLEQDRQARDHACTLI 388
            +P+    DI ++  QDR AR+ A + I
Sbjct: 361 VMPSVAITDIESVFAQDRCARELANSFI 388


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 807,393
Number of extensions: 29882
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 305
Effective length of database: 906,776
Effective search space: 276566680
Effective search space used: 276566680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)