BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2035.p
         (275 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980220|ref|YP_001353743.1| phosphatidate cytidylyltransfer...   300   5e-83

>gi|152980220|ref|YP_001353743.1| phosphatidate cytidylyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 272

 Score =  300 bits (769), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 157/272 (57%), Positives = 201/272 (73%)

Query: 1   MLKTRVITALILLAILLPILYFGYFPAFAMAALVFFAAGAWECFRLFKSPRPTLWAAVWT 60
           MLKTR++TA++LLA+LL ++Y G F AFA+  + FF A AWEC RLF +  P + A +WT
Sbjct: 1   MLKTRIVTAVVLLAVLLLVIYSGSFIAFAVLTVAFFTAAAWECLRLFGNKNPIVGAVLWT 60

Query: 61  LVFSVILFFSGLPSVRSLYVLCVLLWALRFIPALGMGLPKVEAFGNRLLNGTYMLSILGC 120
             F+ +++         L  +CV +WALR  P+L +GLP +    NRLL G Y ++ILG 
Sbjct: 61  AAFAWLIYSGSFKQSVFLAAMCVAIWALRLTPSLALGLPVMSGLANRLLTGIYGIAILGA 120

Query: 121 FVAIADLFRHSPVYLLSVMAVVWVADIGAYFSGKGFGRHKLAPSISPGKSWEGAIGGWLA 180
           F+A+  L+ HS +Y+ S+MA+VW+ADIGAYFSGK FG+ KLAPSISPGKSWEGAIGG + 
Sbjct: 121 FIALLVLYNHSALYMFSIMAIVWIADIGAYFSGKAFGKRKLAPSISPGKSWEGAIGGGIL 180

Query: 181 VLVMSAAVAMSMSGGETFQYHLYSHWGWGGFVGILTLMVVASVVGDLFESQLKRRAGMKD 240
           VL+ +AA  +  +  +TF   LY  WGW GF+ +L LMV AS+VGDLFESQLKRRAGMKD
Sbjct: 181 VLLAAAASIVVPALADTFAVRLYLQWGWPGFLAVLILMVAASIVGDLFESQLKRRAGMKD 240

Query: 241 SSNLLPGHGGVLDRIDALIPVLPLAALVDLWL 272
           SS+LLPGHGGVLDRIDALIP LPLAAL+  W+
Sbjct: 241 SSSLLPGHGGVLDRIDALIPTLPLAALITYWM 272


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.143    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 541,851
Number of extensions: 21864
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 193
Effective length of database: 917,867
Effective search space: 177148331
Effective search space used: 177148331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)