BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2034.p
         (252 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981211|ref|YP_001353744.1| undecaprenyl pyrophosphate synt...   411   e-116

>gi|152981211|ref|YP_001353744.1| undecaprenyl pyrophosphate
           synthetase [Janthinobacterium sp. Marseille]
          Length = 254

 Score =  411 bits (1057), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 187/248 (75%), Positives = 221/248 (89%)

Query: 1   MKHQSSTLAVPETSAVPRHVAIIMDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERG 60
           M   SSTL VPE S VPRH+AIIMDGNGRWATKRF+PRVAGH KGV+AVR IVEACA +G
Sbjct: 1   MTSPSSTLVVPEVSLVPRHIAIIMDGNGRWATKRFMPRVAGHVKGVEAVRGIVEACARQG 60

Query: 61  IEFLTLFAFSSENWRRPADEVSVLMRLFMTVLEREVGKMASNGICLKIVGDMSRFDPKLQ 120
           +E++T FAFSSENWRRP DEVS+LMRLF+T LEREV KM +NGI LKIVGD+SRFD KLQ
Sbjct: 61  VEYVTFFAFSSENWRRPEDEVSLLMRLFVTALEREVSKMHANGIRLKIVGDLSRFDDKLQ 120

Query: 121 EMAARAEAQTAGNSRLTLTVCANYGGRWDVMQAVSKMVKDKPGVTDYSEEELAPYLAMAY 180
           +M + AE +TAGN+RLT+T+CANYGGRWD+MQAV++M+   PG +++SEE+LAPYL++AY
Sbjct: 121 KMISAAERKTAGNTRLTVTICANYGGRWDIMQAVNQMLAANPGSSNFSEEQLAPYLSLAY 180

Query: 181 APEPDLFIRTGGEQRISNFLLWQLAYSELYFTETFWPDFDAKALDQAIGSYQQRERRFGR 240
           APEPDLFIRTGGE+RISNFLLWQLAY+ELYFT+T+WPDFDA AL+ AI SYQQRERRFGR
Sbjct: 181 APEPDLFIRTGGEERISNFLLWQLAYTELYFTDTYWPDFDAAALELAIASYQQRERRFGR 240

Query: 241 TSAQVLDQ 248
           TSAQ+ +Q
Sbjct: 241 TSAQLAEQ 248


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 559,446
Number of extensions: 21142
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 171
Effective length of database: 921,564
Effective search space: 157587444
Effective search space used: 157587444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)