BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2033.p
         (186 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980540|ref|YP_001353745.1| ribosome recycling factor [Jant...   313   3e-87

>gi|152980540|ref|YP_001353745.1| ribosome recycling factor
           [Janthinobacterium sp. Marseille]
          Length = 186

 Score =  313 bits (803), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 154/186 (82%), Positives = 169/186 (90%)

Query: 1   MSVADVKKNTEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVEYYGSPTGLSQVANLTL 60
           M+VAD KK  +QKM KSIETLKA+LAKVRTGRAHTG+LD VMVEYYG+PT LSQVAN+TL
Sbjct: 1   MTVADAKKTADQKMQKSIETLKADLAKVRTGRAHTGILDHVMVEYYGNPTNLSQVANVTL 60

Query: 61  IDARTIGVQPYEKKMAAVIEKAIREADLGLNPATHGDLIRVPMPALTEERRKEMVKLVKS 120
           IDARTIGVQP+EKKM AV+EKAIREADLGLNPAT G+LIRVP P LTEERRKEMVKLVKS
Sbjct: 61  IDARTIGVQPFEKKMVAVVEKAIREADLGLNPATQGELIRVPTPPLTEERRKEMVKLVKS 120

Query: 121 EAEDAKIAVRNIRREGNEGLKKLVKDKVASEDDERRGQDEIQKLTDKFVADIDKMVTEKE 180
           EAEDAKIAVRNIRR+ NE LKKLVK+K  SED+ERR QDEIQKLTDKFV +IDK+V EKE
Sbjct: 121 EAEDAKIAVRNIRRDANESLKKLVKEKACSEDEERRAQDEIQKLTDKFVIEIDKLVVEKE 180

Query: 181 KEVMTV 186
           KEV+TV
Sbjct: 181 KEVLTV 186


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.311    0.129    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 371,696
Number of extensions: 14092
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 108
Effective length of database: 932,655
Effective search space: 100726740
Effective search space used: 100726740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 127 (53.5 bits)