BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2031.p
         (295 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980693|ref|YP_001353747.1| elongation factor Ts [Janthinob...   460   e-131

>gi|152980693|ref|YP_001353747.1| elongation factor Ts
           [Janthinobacterium sp. Marseille]
          Length = 293

 Score =  460 bits (1184), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/280 (80%), Positives = 251/280 (89%), Gaps = 1/280 (0%)

Query: 1   MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60
           MA ITAAMVG+LRA TDAPMMECKKALTEADGD  KAEEILRVKLGSKASKA++R+TAEG
Sbjct: 1   MAVITAAMVGELRALTDAPMMECKKALTEADGDPVKAEEILRVKLGSKASKAATRVTAEG 60

Query: 61  VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120
           V++ Y++GNVGAL+EVNCETDFVTKND+F+G      KLV E+NPADVAAL A  L +GK
Sbjct: 61  VVAAYVSGNVGALIEVNCETDFVTKNDDFLGFANTLVKLVAEKNPADVAALSALPL-EGK 119

Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSGKLASYLHGTRIGVVVEFDGADEQVGKDVAMH 180
           T+EE R  LIGRIGENMS RRF RFET+GKLASYLHGTRIGV+V+F+GADEQVGKDVAMH
Sbjct: 120 TVEETRAALIGRIGENMSIRRFVRFETTGKLASYLHGTRIGVMVDFEGADEQVGKDVAMH 179

Query: 181 IAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKFLKEVSLFNQ 240
           IAAMKPVALS++ VPADLI KERSVA LKAAES KPADIVAKM++GSVQK+LKEVSL NQ
Sbjct: 180 IAAMKPVALSSDNVPADLIAKERSVAELKAAESNKPADIVAKMIEGSVQKYLKEVSLLNQ 239

Query: 241 AFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIEKKQDDF 280
           +FVKNDKQ+VEQMLK A +TVKSF M+VVGEGIEKKQDDF
Sbjct: 240 SFVKNDKQTVEQMLKEAKSTVKSFTMFVVGEGIEKKQDDF 279


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.128    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 580,640
Number of extensions: 23079
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 212
Effective length of database: 914,170
Effective search space: 193804040
Effective search space used: 193804040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)