BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2030.p
         (246 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980757|ref|YP_001353748.1| small subunit ribosomal protein...   457   e-130

>gi|152980757|ref|YP_001353748.1| small subunit ribosomal protein S2
           [Janthinobacterium sp. Marseille]
          Length = 264

 Score =  457 bits (1175), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 218/248 (87%), Positives = 238/248 (95%), Gaps = 2/248 (0%)

Query: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPYIFGHRNKIHIVNLEKTLGMYQEALKYVRQLS 60
           MSVTMREMLEAGVHFGHQTRFWNPKMAP+IFGHRN+IHIVNLEKT+GMYQEA+KY+RQLS
Sbjct: 17  MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLS 76

Query: 61  ANRGTILFVGTKRQAREILATEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASI 120
           +NRGT+LFVGTKRQARE +A EAQRAG+PYVDQRWLGGMLTNFKTIKTSIKRLKEMEASI
Sbjct: 77  SNRGTVLFVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASI 136

Query: 121 EDGSVEKLSKKEGLLFRRELEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 180
           EDGSV+KLSKKE L+F RE  KL+K+IGGIKDMGGIPDAIFV+DVGYHKGAITEAAKLGI
Sbjct: 137 EDGSVQKLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGI 196

Query: 181 PVIGVVDTNHSPEGVTYVIPGNDDSAKAISLYARGVADAVLEGRANAVNDVVEAVK-GDE 239
           PVIGVVDTNHSPEGVTYVIPGNDDS+KAI LYARGVADA+LEGRANA ND+VE++K GD+
Sbjct: 197 PVIGVVDTNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRANATNDLVESIKGGDD 256

Query: 240 FVEV-EQA 246
           FVEV EQA
Sbjct: 257 FVEVSEQA 264


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 548,136
Number of extensions: 22167
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 165
Effective length of database: 921,564
Effective search space: 152058060
Effective search space used: 152058060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)